Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0075
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 58 2e-09
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 28 1.1
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 27 2.0
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 3.4
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 27 3.4
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 6.0
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.0
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 7.9
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 25 7.9
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Frame = +3
Query: 405 GFKEICNGKVGVLLLAGGQATRLGFGHPKGMYDVGCHQEKPCSRYKPRGSWRVQQMAAEK 584
G +EI G V L+LAGGQ TRLGF PKG + +G + + + +A
Sbjct: 89 GLREIARGHVAALVLAGGQGTRLGFAGPKGCFRLGLPNNPSIFELQAQKIKKSLALARAA 148
Query: 585 YGNEG---KITWYIMTSETHESPYCKIISKSHSYFGLNENDV 701
+ ++ I WYIM SE K + +FG+++ DV
Sbjct: 149 FPDQEASISIPWYIMVSECTSEETISFF-KENDFFGIDKKDV 189
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 529 VPDTSREDPGEFSRWLPKN 585
+PD+ +D GE RW P+N
Sbjct: 70 LPDSELDDTGEAKRWFPRN 88
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 115 KSRSEKMY-ETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILK 246
K ++ K Y E L + ++D QEH KY S L E + K D +LK
Sbjct: 42 KGKNIKDYIEALRKGIED--QEHCEKYASTLLEPRPKTKKDVVLK 84
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 668 TFGNNFAVGAFVCFRSHNIPCYFTF 594
+FGN + +F+CF S + FTF
Sbjct: 49 SFGNAYICTSFLCFHSDDFKTRFTF 73
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 351 YESVPNLTPDKIEEYENIGFKEICN---GKVGVLLLAGGQATRLGFGHPKGMYDVGCHQ 518
++S+ L P+ + +Y ++ + ++ V+ L GG LG +PK M +V +Q
Sbjct: 73 WDSIRPLGPEDMIDYGDLPLCKNAGKYLNRLAVVKLNGGMGNALGVNYPKAMIEVRDNQ 131
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 145 LLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRKCMQHF 276
++ LKD+ L+ Y+ L EE K +D+ L + +C+Q F
Sbjct: 23 VIEKLKDNISGDLLNYFLNLLEEISKLDTDQPLSVTSLRCLQLF 66
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 151 RNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLD 252
R L GQ+ +++ W+VL E + ++ E D
Sbjct: 251 RYLAVGGQDRILRIWAVLDSEHARSVASETCSSD 284
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 611 PCYFTFVSIFFGSHLLNSPGSSRL 540
P + + +FFGS + NSP S L
Sbjct: 377 PYFIIYTLVFFGSSIANSPSVSLL 400
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 383 D*RIRKYRI*RNMQWESWCALVSWRSGDAARFR 481
D R++ Y N E+W WR+GDA+ R
Sbjct: 35 DQRVKVYDF--NDDTETWAITSEWRAGDASLMR 65
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 357 SVPNLTPDKIEEYE 398
+VP+LTPD +EE++
Sbjct: 37 TVPHLTPDNVEEFD 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,939
Number of Sequences: 5004
Number of extensions: 63797
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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