Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0075
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1136 - 31142742-31142806,31143245-31143325,31143432-311435... 46 3e-05
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 36 0.041
05_07_0100 + 27679280-27680320 31 0.89
08_02_0414 + 16885168-16885301,16885411-16885589,16886351-168863... 29 2.7
10_08_0005 + 14030414-14030519,14030612-14030921,14031012-140312... 29 3.6
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319... 29 4.7
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159... 29 4.7
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 8.3
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418... 28 8.3
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 28 8.3
>04_04_1136 -
31142742-31142806,31143245-31143325,31143432-31143588,
31143695-31143809,31144016-31144083,31144171-31144314,
31144393-31144470,31144555-31144637,31144729-31144768,
31144993-31145067,31145202-31145314,31145839-31145878,
31145977-31146128,31146351-31146405,31146717-31146776,
31147005-31147268,31148379-31148436,31148606-31148637
Length = 559
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/52 (44%), Positives = 28/52 (53%)
Frame = +3
Query: 345 SHYESVPNLTPDKIEEYENIGFKEICNGKVGVLLLAGGQATRLGFGHPKGMY 500
S V P+ E + G K I GK+ V+LLAGGQ TRLG PKG +
Sbjct: 169 SSVSKVEERLPEDKERWWKKGLKAISEGKLAVVLLAGGQGTRLGSSDPKGCF 220
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 139 ETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEI 240
+ +L +KD+GQE W LS E R+ L +I
Sbjct: 80 QAMLERMKDYGQEGAFALWDELSPEDRELLVRDI 113
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 561 VQQMAAEKYGNEGKITWYIMTSETHESPYCKIISKSHSYFGLNENDV 701
+Q++AA+ +I WYIMTS + K +SH YFGL + V
Sbjct: 206 IQKLAAQSTDGTPQIHWYIMTSPFTDEATRKFF-ESHRYFGLEPDQV 251
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 139 ETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRK 261
+ L+ LKD+GQE W L+ E+R L +I LDL +
Sbjct: 23 QELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLDLAR 63
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 345 SHYESVPNLTPDKIEEYENIGFKEICNGKVGVLLLAGGQ 461
S +V + TP+ + + G K I GK+ V+LLAGGQ
Sbjct: 88 SSVSTVEDRTPEDKQRWWKRGLKAISEGKLAVVLLAGGQ 126
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
Frame = +2
Query: 506 GLPSRKTLFQIQAERIL------ASSADGCRKI 586
GLPS K+LFQ+QAERIL A S DG +I
Sbjct: 188 GLPSGKSLFQLQAERILCIQKLAAQSTDGTPQI 220
>05_07_0100 + 27679280-27680320
Length = 346
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 413 RNMQWESWCALVSWRSGDAARFRPP*GNVRC--GLPSRKTLFQIQAERILASS 565
R QW+ V+ R G AAR RPP +V+C + + K ++ + R++ S+
Sbjct: 66 RQKQWQEVADAVNSRRGAAARRRPPRTDVQCKNRVDTLKKKYKAERARVMPST 118
>08_02_0414 +
16885168-16885301,16885411-16885589,16886351-16886389,
16886565-16886593,16886778-16886840,16888188-16888291,
16888409-16888919
Length = 352
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 16 NSENVLVQLPGNGPVHA-F*SSYTVDEHLNLFVNKSRSEKMYETLLRNLKDH 168
N+ +V G G VHA + V +NL++N S +KM E + L H
Sbjct: 143 NTGDVQWMTAGRGVVHAEMPGGHGVQRGINLWINLSSKDKMVEPRYQELASH 194
>10_08_0005 +
14030414-14030519,14030612-14030921,14031012-14031233,
14031326-14031565,14031727-14031804,14031841-14032036,
14032084-14032265,14032351-14032433,14032526-14032650,
14032762-14032840,14032924-14033092,14033171-14033231,
14033312-14033434,14033552-14033749,14033927-14033995,
14034244-14034320,14034475-14034562
Length = 801
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 519 EKPCSRYKPRGSWRVQQMAAEKYGNEGKITWYIMTSETHESPYCKIISKSHS 674
EK C+ +K +G W ++ E Y +G+ + +++ + E K IS+S S
Sbjct: 178 EKDCNNWKGQGDW--EEDWGETYSKKGRPSLFVLDINSGEVRAAKGISRSLS 227
>11_06_0364 -
22727978-22729149,22730475-22730727,22731628-22731963,
22732306-22732512,22734988-22735686,22736441-22736590,
22740204-22740962,22741023-22741235
Length = 1262
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 88 DEHLNLFVNKSRSEKMYETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRKC 264
D L L + K+ + M E + LK HGQ+ L+ ++ + ++ DE KL ++KC
Sbjct: 617 DTELRLMLGKANTPGMTEEISPLLKKHGQDRLLYKQNI---DLTPEMIDE-AKLIIKKC 671
>11_06_0361 -
22711200-22712180,22712523-22712729,22715205-22715903,
22717848-22717979,22720422-22721180,22721241-22721453
Length = 996
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 88 DEHLNLFVNKSRSEKMYETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRKC 264
D L L + K+ + M E + LK HGQ+ L+ ++ + ++ DE KL ++KC
Sbjct: 611 DTELRLMLGKANTPGMTEEISPLLKKHGQDRLLYKQNI---DLTPEMIDE-AKLIIKKC 665
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 430 KLVCSC*LEVRRRGSVSATLRECTMWVAIKKNLVPDTSREDPGEFSRWLPKNME 591
K+ S L+ + G +C + + K L PD+S + G + KN+E
Sbjct: 278 KISSSSILDRIKMGGTDDFTMQCILMILFSKLLAPDSSTDITGNIVNMVSKNLE 331
>07_03_1550 +
27641099-27641288,27641433-27641646,27641738-27641843,
27642213-27642257,27642275-27642540,27642980-27642991,
27643201-27643480,27643716-27643823,27644276-27644362,
27644448-27644552,27644995-27645125,27645249-27645309
Length = 534
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 181 LIKYWSVLSEEQRKQLSDEILKLDLRKCMQHFRGQLNLRKKY*KN*TTT*NQYRIVTMSL 360
L+++ + EE+ K+++D +++ RGQ LRK Y ++ Y T
Sbjct: 402 LVEFHQPVREEKEKEITDRDVEMGFDISHTKHRGQYALRKVYHESPRLVCVLYTSPTCGP 461
Query: 361 YRT*RPIRLK 390
RT +PI K
Sbjct: 462 CRTLKPILSK 471
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 435 GVLLLAGGQATRLGFGHP 488
GVL A G+A RLGFG P
Sbjct: 238 GVLTAAAGEAHRLGFGDP 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,185
Number of Sequences: 37544
Number of extensions: 404332
Number of successful extensions: 1025
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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