Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0075
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical pr...    50   1e-06
U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical pr...    32   0.35 
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81571-10|CAB04621.2|  341|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81504-5|CAB04120.2|  341|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF125461-2|AAK18994.1|  158|Caenorhabditis elegans Hypothetical ...    28   5.6  
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized mu...    28   7.4  
AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L) prot...    28   7.4  
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    27   9.8  
U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    27   9.8  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical
           protein C36A4.4 protein.
          Length = 484

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
 Frame = +3

Query: 399 NIGFKEICNGKVGVLLLAGGQATRLGFGHPKGMYDVGCHQEKPCSRYKPRGS--WRVQQM 572
           N G   I  G+V  ++LAGGQATRLG   PKG   +G +     S    + +    +Q +
Sbjct: 91  NKGMDAIGRGEVCAIVLAGGQATRLGSSQPKGTIPLGINASFGDSLLGIQAAKIALLQAL 150

Query: 573 AAEK-YGNEGKITWYIMTSETHESPYCKIISKSHSYFGLN 689
           A E+ + N GKI W +MTS   E    + + K  ++ G +
Sbjct: 151 AGEREHQNPGKIHWAVMTSPGTEEATREHVKKLAAHHGFD 190


>U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical
           protein K06B9.2 protein.
          Length = 378

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +3

Query: 417 ICNGKVGVLLLAGGQATRLGFGHPKGMYDVGCHQEKPCSRYKPRGSWRVQQMAAEK-YGN 593
           I  G+V  ++LAGGQATRLG     G+      Q    +         +Q +A E+ + N
Sbjct: 4   IGRGEVCAIVLAGGQATRLGSNSLLGI------QAAKIA--------LLQALAGEREHQN 49

Query: 594 EGKITWYIMTSETHESPYCKIISKSHSYFGLN 689
            GKI W +MTS   E    + + K  ++ G +
Sbjct: 50  PGKIHWAVMTSPGTEEATREHVKKLAAHHGFD 81


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 48  QWASSRFLIVVYGRRAFKFVCKQI 119
           QWASS FL++ +G R + ++ K +
Sbjct: 168 QWASSLFLVIFFGVRCYLYIGKLV 191


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 145 LLRNLKDHGQEHLIKYWSVLSEEQ 216
           LL  LKDH + H  +YW +L +E+
Sbjct: 540 LLAVLKDHSKVHKDQYWQLLKDER 563


>Z81571-10|CAB04621.2|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.13 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 429 SHCIFL*IRYFRILQSYRASSSVQTH 352
           S+CIFL ++   ILQ +R S S QT+
Sbjct: 212 SYCIFLGVQTLLILQQHRKSMSRQTY 237


>Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.1 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 429 SHCIFL*IRYFRILQSYRASSSVQTH 352
           S+CIFL ++   ILQ +R S S QT+
Sbjct: 212 SYCIFLGVQTLLILQQHRKSMSRQTY 237


>Z81504-5|CAB04120.2|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.13 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 429 SHCIFL*IRYFRILQSYRASSSVQTH 352
           S+CIFL ++   ILQ +R S S QT+
Sbjct: 212 SYCIFLGVQTLLILQQHRKSMSRQTY 237


>AF125461-2|AAK18994.1|  158|Caenorhabditis elegans Hypothetical
           protein Y8A9A.3 protein.
          Length = 158

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 112 NKSRSEKMYETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILK 246
           N  R  ++Y      L +   EH  + W  + +EQR+Q+ +++++
Sbjct: 107 NNQRPVQVYHQRWELLPNEEAEHWKEMWVQMRDEQREQIEEQLIE 151


>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical
           protein F20D12.2 protein.
          Length = 1116

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +3

Query: 363 PNLTPDKIEEYENIGFKEICNGKVGVLLLAGGQATRLGFGHPKGMYDVGCHQEKPCSRYK 542
           P +  + I+E +++  KE      GV L A           PKG   +    EKP S  K
Sbjct: 166 PKIEEESIDETDHVIKKEAPPSMFGVTLAA-----------PKGFGSISSLTEKPSSSIK 214

Query: 543 PRGSWR 560
             GSW+
Sbjct: 215 SFGSWK 220


>U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized
           muscle protein 1,isoform a protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 161 FRFRNNVSYIFSLRDL-FTNKFKCSSTVYDD*KA*TGPLPGSCTKTFSLFSLHN 3
           F+  +++    S  DL   N FKC+S   ++    + PLPG  T  +SL   +N
Sbjct: 8   FKISDSILADESFDDLEINNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYN 61


>AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L)
           protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 161 FRFRNNVSYIFSLRDL-FTNKFKCSSTVYDD*KA*TGPLPGSCTKTFSLFSLHN 3
           F+  +++    S  DL   N FKC+S   ++    + PLPG  T  +SL   +N
Sbjct: 8   FKISDSILADESFDDLEINNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYN 61


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 154 FVIMFHTFFHSAICLQTNL 98
           F++MF+TFF  +ICL  NL
Sbjct: 201 FLLMFNTFFWFSICLGFNL 219


>U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical
           protein T21E12.2 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 169 HDLLGFVIMFHTFFHSAICLQTNLNARRPYT 77
           H +L  + ++H FF  A+ LQTN+    P++
Sbjct: 332 HSML-LLFLYHFFFLLALLLQTNIRTHLPFS 361


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 85  VDEHLNLFVNKSRSEKMYETLLRNLKDHGQE---HLIKYWSVLSEEQRKQLSDEILKLDL 255
           V   +N F+  SR ++  +  L N K H  E    L   W +LSE++++   DE  +L  
Sbjct: 60  VKRPMNAFMVWSRGQRK-KMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAKRLRA 118

Query: 256 RKCMQH 273
               +H
Sbjct: 119 IHMKEH 124


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 481 PK-PSRVA*PPANKSTPTFPLHISLNPIFSYSS 386
           PK P+RVA PP   + PT    IS  P  SYSS
Sbjct: 433 PKTPTRVAPPPPPSAPPTIKFPISTGP--SYSS 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,208
Number of Sequences: 27780
Number of extensions: 357971
Number of successful extensions: 1028
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)