Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0073
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 127 1e-30
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 113 2e-26
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 101 1e-22
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 95 7e-21
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 79 5e-16
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 73 4e-14
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 55 1e-08
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 54 3e-08
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 53 5e-08
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 51 2e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 49 8e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 48 1e-06
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 46 4e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 44 2e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 44 2e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 42 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.001
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 37 0.003
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.68
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.3
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 25 8.4
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 127 bits (307), Expect = 1e-30
Identities = 54/95 (56%), Positives = 71/95 (74%)
Frame = +3
Query: 228 LGPLGYSRTEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIIL 407
LG + EDYDRLRPLSYPQTDVFL+CFS+ +PASFENV+ KW+PEV HHCP P ++
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLI 112
Query: 408 VGTKLDLREDKDTIEKLKDKKLAPITYTQGLGMSR 512
VGT++DLR+D +KL + P+T+ QG ++R
Sbjct: 113 VGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLAR 147
Score = 100 bits (240), Expect = 2e-22
Identities = 49/85 (57%), Positives = 59/85 (69%)
Frame = +1
Query: 88 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQKTTI 267
CVVVGDGAVGKTCLLISYTTN FP +Y+PTVFDNY+ VM+ +P LGL+DTAGQ+
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQE-DY 64
Query: 268 DSAPSLTHRRTSSLYVFRWSTQPHS 342
D L++ +T V T P S
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPAS 89
Score = 55.2 bits (127), Expect = 9e-09
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +2
Query: 509 KEINAVKYLECSALTQKGLKTVFDEAIRAVLCPVQP 616
+E+ AVKY+ECSALTQKGLK VFDEAI A L P P
Sbjct: 147 RELGAVKYVECSALTQKGLKNVFDEAIVAALDPPVP 182
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 113 bits (272), Expect = 2e-26
Identities = 48/80 (60%), Positives = 61/80 (76%)
Frame = +3
Query: 255 EDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRE 434
E+YDRLRPLSYP ++V L+CFS+ PAS NV KWYPEV+H CP TPI+LVG K DLR+
Sbjct: 75 EEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRK 134
Query: 435 DKDTIEKLKDKKLAPITYTQ 494
D++ E L+ + L P+TY Q
Sbjct: 135 DRNATEVLRTQGLTPVTYQQ 154
Score = 71.7 bits (168), Expect = 1e-13
Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPINLGLWDTAGQK 258
VVVGDG GKTCLLI +++ FP Y+PTVF+NY ++ + K I L LWDTAGQ+
Sbjct: 18 VVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 101 bits (242), Expect = 1e-22
Identities = 46/81 (56%), Positives = 56/81 (69%)
Frame = +3
Query: 255 EDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRE 434
EDYDRLRPLSYP + V LICFS+ P S +NV+ KW EV H C + PI+LVG K+DLR
Sbjct: 65 EDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRN 124
Query: 435 DKDTIEKLKDKKLAPITYTQG 497
D TIE+L PIT+ +G
Sbjct: 125 DPKTIEELSKTSQKPITFEEG 145
Score = 83.4 bits (197), Expect = 3e-17
Identities = 36/56 (64%), Positives = 44/56 (78%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQK 258
V+VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDG+ I L LWDTAGQ+
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQE 65
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 509 KEINAVKYLECSALTQKGLKTVFDEAIRAVLCPVQP 616
++I A KYLECSA +G+ VF+ A RA + +P
Sbjct: 150 QKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKP 185
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 95.5 bits (227), Expect = 7e-21
Identities = 43/87 (49%), Positives = 57/87 (65%)
Frame = +3
Query: 255 EDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRE 434
EDYDRLRPLSYP + V LICF++ +P S +NV+ KW EV H C S PI+LV K DLR
Sbjct: 65 EDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRN 124
Query: 435 DKDTIEKLKDKKLAPITYTQGLGMSRR 515
D IE+L P+T +G ++++
Sbjct: 125 DPKIIEELSKTNQHPVTTEEGQAVAQK 151
Score = 83.0 bits (196), Expect = 4e-17
Identities = 35/56 (62%), Positives = 44/56 (78%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQK 258
V+VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDG+ + L LWDTAGQ+
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQE 65
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 509 KEINAVKYLECSALTQKGLKTVFDEAIRAVLCPVQP 616
++I A KYLECSA T +G++ VF+ A RA + +P
Sbjct: 150 QKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKP 185
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 79.4 bits (187), Expect = 5e-16
Identities = 35/56 (62%), Positives = 42/56 (75%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQK 258
VVVGDGA GKT LL +T FP EY+PTVF+NY ++ VDGK + L LWDTAGQ+
Sbjct: 12 VVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQE 67
Score = 79.0 bits (186), Expect = 6e-16
Identities = 36/90 (40%), Positives = 54/90 (60%)
Frame = +3
Query: 192 LGECHGRWKANQLGPLGYSRTEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPE 371
+ +C K+ QL + E+Y+RLRP+SY + + L+ F++ +P S ENV KW E
Sbjct: 46 VSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEE 105
Query: 372 VRHHCPSTPIILVGTKLDLREDKDTIEKLK 461
+ CP+ P ILVG K DLR D IE+++
Sbjct: 106 INTLCPNVPFILVGMKADLRSDPVAIEEMR 135
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 509 KEINAVKYLECSALTQKGLKTVFDEAIRAVL 601
+ I A KY+ECS+LT G+ VF+ A RA L
Sbjct: 152 QRIGARKYMECSSLTGDGVDDVFEAATRAAL 182
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQKTTID 270
V++GDGA GKT LL +T FP Y PT+F+NY ++ VDG I L LWDTAGQ+ D
Sbjct: 17 VILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQE-EYD 75
Query: 271 SAPSLTHRRTSSLYV 315
SL++ T + +
Sbjct: 76 QLRSLSYSDTHVIMI 90
Score = 71.7 bits (168), Expect = 1e-13
Identities = 36/87 (41%), Positives = 53/87 (60%)
Frame = +3
Query: 255 EDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRE 434
E+YD+LR LSY T V +ICF++ + S ENV KW PEV +CP ++LV K DLR
Sbjct: 72 EEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRG 131
Query: 435 DKDTIEKLKDKKLAPITYTQGLGMSRR 515
+ E++ K+ I Y +GL +++
Sbjct: 132 ADE--EQVDHSKI--IDYEEGLAAAKK 154
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2
Query: 494 GFGHVKEINAVKYLECSALTQKGLKTVFDEAIRAVLCPVQP 616
G K+INAV+YLECSA +G+ F EA R L QP
Sbjct: 148 GLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALA-AQP 187
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQK 258
V++GD VGKTCL+ + F EY T+ D + +V+VD K + L LWDTAGQ+
Sbjct: 12 VILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 53.6 bits (123), Expect = 3e-08
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQK 258
+++GD VGK+CLL+ ++ ++F +I T+ D + +DGK I L +WDTAGQ+
Sbjct: 13 LLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Score = 29.9 bits (64), Expect = 0.39
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 306 LICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLREDK 440
L+ + + + SF+NVR W+ V H IL+G K D + +
Sbjct: 86 LLLYDVTDKKSFDNVRT-WFSNVEQHASENVYKILIGNKCDCEDQR 130
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.8 bits (121), Expect = 5e-08
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQK 258
VVVGDG VGK+ L I + F EY PT+ D+Y +DG+ L + DTAGQ+
Sbjct: 12 VVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQK 258
+++GD VGK+CLL+ + + + YI T+ ++ ++GK + L +WDTAGQ+
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 48.8 bits (111), Expect = 8e-07
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQK 258
+++G+ VGKT ++ Y F +Y T+ D + V+VD K + L LWDTAGQ+
Sbjct: 12 IILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQK 258
V++GD VGK+ LL+ +T N F E T+ ++ N+++D K I +WDTAGQ+
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 46.4 bits (105), Expect = 4e-06
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 94 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQKTTID 270
++GD ++GKT L+++Y +F E T+ N+ + + I +WD GQ+ ++
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 271 SAPSLTHRRTSSLYVF 318
P + + + L++F
Sbjct: 75 MLPMVCNDAVAILFMF 90
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 258 DYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLD---- 425
++ + P+ L F L ++ +++ +WY + R + IL+GTK D
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIK-EWYRQARGFNKTAVPILIGTKYDHFMT 129
Query: 426 -LREDKDTIEK 455
RED++ I K
Sbjct: 130 FPREDQEEITK 140
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 94 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ 255
V+G +VGK+ L + Y N F Y PT+ + +S N+ G+ + DTAGQ
Sbjct: 11 VLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQ 64
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQKTTI 267
V +G+ +VGKT L+ + + F Y T+ D S + ++ + + L LWDTAGQ+
Sbjct: 15 VFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 74
Query: 268 DSAPSLTHRRTSSLYVFRWSTQPHS 342
PS + R SS+ + + H+
Sbjct: 75 SLIPS--YIRDSSVAIIVYDITNHN 97
Score = 34.3 bits (75), Expect = 0.018
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 EDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLR 431
E + L P + V +I + + N SF N KW +VR I+LVG K DL
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTE-KWIEDVRAERGDDVIIVLVGNKTDLA 129
Query: 432 EDKDTIEKLKDKK 470
+ + ++ +KK
Sbjct: 130 DKRQVTQEEGEKK 142
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 255 EDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 431
E Y L P+ Y + ++ + + AS E ++ W E++ P +I L G KLDL
Sbjct: 75 ERYKSLAPMYYRNANCAIVVYDITQAASLEKAKS-WIKELQRQAPEGIVIALAGNKLDLA 133
Query: 432 EDKDTIEK 455
+++ +EK
Sbjct: 134 QERRAVEK 141
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPINLGLWDTAGQKTT 264
V++GD AVGK+ L++ + + F T+ + + + + L +WDTAGQ+
Sbjct: 18 VLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERY 77
Query: 265 IDSAPSLTHRRTSSLYVF 318
AP ++ V+
Sbjct: 78 KSLAPMYYRNANCAIVVY 95
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQK 258
V+VGDG GKT + + T F +YI T+ + + + + I +WDTAGQ+
Sbjct: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +3
Query: 270 LRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLREDK 440
LR Y Q +I F + + +++NV W+ ++ C + PI+L G K+D++E K
Sbjct: 74 LRDGYYIQGQCGIIMFDVTSRITYKNV-PHWWRDLVRVCENIPIVLCGNKVDVKERK 129
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 91 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPINLGLWDTAGQ 255
V+ G GK+CLL + N + + TV ++++ ++ G K I L +WDTAGQ
Sbjct: 13 VLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQ 72
Query: 256 K 258
+
Sbjct: 73 E 73
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.68
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 88 CVVVGDGAVGKTCLL 132
C++VGD A GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 326 QPSLIRKRSGQVVSRSSASLPVDAHHPGRD 415
QPS + S VSRSS+S+ V++ HPG D
Sbjct: 674 QPSNHGRNSS--VSRSSSSVEVNSKHPGSD 701
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 88 CVVVGDGAVGKTCLLISYTTN 150
C VVG + GKT LL S+ N
Sbjct: 424 CFVVGSKSCGKTALLSSFINN 444
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 121 TCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPINLGLWDTAGQKTTIDSAPSL 285
T +LI + G+YIPT F+ V M+ + IN + G T D++P +
Sbjct: 6 TMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,823
Number of Sequences: 5004
Number of extensions: 61067
Number of successful extensions: 232
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -