Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0073
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.8  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.0  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.0  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.0  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.0  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   9.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +3

Query: 261 YDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTP 398
           YD +    YP T       + +NP  +  + AK+    +  C  +P
Sbjct: 290 YDDINQWVYPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSP 335


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 315 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLREDKDTIE 452
           + L NPA  ++  +  YP    H    P I   T+       DT++
Sbjct: 426 YRLYNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQQFPYVHDTLQ 471


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +2

Query: 89  VLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           + + E +P  +H+  S +     P N Y
Sbjct: 366 ISIQEQIPRFRHIGPSTSFPRFIPPNAY 393


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  SSVLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           S + + E +P  +H+  S       P N Y
Sbjct: 130 SWISIQEQIPRFRHIGPSTPFPRFIPPNAY 159


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  SSVLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           S + + E +P  +H+  S       P N Y
Sbjct: 130 SWISIQEQIPRFRHIGPSTPFPRFIPPNAY 159


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  SSVLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           S + + E +P  +H+  S       P N Y
Sbjct: 130 SWISIQEQIPRFRHIGPSTPFPRFIPPNAY 159


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  SSVLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           S + + E +P  +H+  S       P N Y
Sbjct: 130 SWISIQEQIPRFRHIGPSTPFPRFIPPNAY 159


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  SSVLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           S + + E +P  +H+  S       P N Y
Sbjct: 130 SWISIQEQIPRFRHIGPSTLFPRFIPPNAY 159


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  SSVLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           S + + E +P  +H+  S       P N Y
Sbjct: 130 SWISIQEQIPRFRHIGPSTPFPRFIPPNAY 159


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +2

Query: 89  VLLLEMVPSVKHVCSSVTLQMLFPANIY 172
           V + E +P  +H+  S       P N Y
Sbjct: 141 VPMQEQIPRFRHIGPSTPFPQFIPPNAY 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,815
Number of Sequences: 438
Number of extensions: 4442
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)