Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0072
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 42 1e-04
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 2.9
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 3.8
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 3.8
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 6.7
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c... 25 8.8
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 25 8.8
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 76 MLDLFSIFSKGGIVLWCFQSTSEIFSPSVNALIRSVILQE-RSGNNTFNHNALTLQYK 246
M+DLF+I +KGGIVLW ++ S + + L L E R+ NNT + T+QY+
Sbjct: 1 MIDLFAIVNKGGIVLW-KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQ 57
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 549 PFSSPLRSIIDATVFWIFGNPQKSSSV 469
P +SP S+I+ + + F NP KS+SV
Sbjct: 355 PHASPKDSLINKSNSYFFQNPPKSNSV 381
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 304 DNWSMRWYATTKTSSNSYLVCIVV 233
D+W+ WY+T ++ +SY VV
Sbjct: 449 DDWASSWYSTVRSQLDSYNCQFVV 472
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 445 AHISHSFSTLSKVVLKLKSTI 383
AHI H STLS +LKL I
Sbjct: 65 AHIDHGKSTLSDCILKLTGVI 85
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 473 DEDF*GFPKIQKTVASMIER-KGDEKGKXTVKIVESKNLTNGKAEEVTNN 619
D DF P V+S IE GDE G T +VE+ T +E T +
Sbjct: 752 DVDFVDRPT--SVVSSQIENINGDENGNTTSSVVETFEKTTDVVDEKTTS 799
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 417 KVLKECEIWAKSQAKIPKQMRTFEDSQK 500
K+LK C+IW K+ P+++ + K
Sbjct: 121 KILKLCDIWEKASTFPPEKLESLRSKLK 148
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = -3
Query: 391 STIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKT 266
++I ++SS++Y ++ S ++ LS ++W + +A +T
Sbjct: 424 NSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYET 465
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 95 FSVKGVLCYGVSKVLVKYF 151
+ + G CYGVS L +YF
Sbjct: 300 YMIIGATCYGVSNTLEEYF 318
>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 279 AYQRILQL--SYV-DKFLNDVHLEFRDKYKNELQTGPCIVD 392
A QR+L L SY+ + L ++ LEFR ++K+ CI+D
Sbjct: 251 ACQRVLGLIKSYMRPRTLEELKLEFRFEHKSVQDITTCILD 291
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 8.8
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = -3
Query: 433 HSFSTL-----SKVVLKLKSTIQGPVWSSFLYLSL-NSKWTSLRNLSTYDNWSMRWYATT 272
H STL +K +L + I P S +Y+ L NS S RN+S N + +WY
Sbjct: 420 HKLSTLYRGMQNKCTRRLLAVIIEP---SIIYICLKNSAVQSNRNVSPSANHNEQWYLVR 476
Query: 271 KTSS 260
T+S
Sbjct: 477 FTTS 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,689
Number of Sequences: 5004
Number of extensions: 52266
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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