Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0072
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 43 2e-04
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 31 0.74
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 31 0.74
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 31 0.74
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 31 0.97
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 29 2.3
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 3.9
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 28 5.2
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 28 5.2
12_02_0202 - 15465885-15466241,15466539-15468122 28 6.9
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465... 27 9.1
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 27 9.1
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 70 IKMLDLFSIFSKGGIVLW--CFQSTSEIFSPS-VNALIRSVILQERSGNNTFNHNALTLQ 240
++ML+ IF++GG++LW C S ++ALIRS +L+ERS + +F+ + L+
Sbjct: 425 VEMLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDTYALK 484
Query: 241 YKLDKSL 261
+ + L
Sbjct: 485 WTFNNDL 491
Score = 34.7 bits (76), Expect = 0.060
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +3
Query: 264 LVFVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIW 443
LVFV YQR+L L YVD L V EF Y + ++ F++V ++ +
Sbjct: 493 LVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRT--------SYDDAFNEVFRQLHLE 544
Query: 444 AKSQAKIPKQMRTFEDSQKSK 506
A+++++ K+ + S+ +K
Sbjct: 545 AEARSEEMKKNKQVTGSRPTK 565
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 31.1 bits (67), Expect = 0.74
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +3
Query: 348 DKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKR 512
DK K+EL G I+D+ + T+DK L E W KS +PK + S K K+
Sbjct: 1434 DKEKHELVFG--IIDYLRQYTWDKQL---ETWVKSSLVVPKNVSPTVVSPKEYKK 1483
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 31.1 bits (67), Expect = 0.74
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -3
Query: 535 FAFDHRCNRFLD--FWESSKVLICFGILACDFAHISHSFSTLSKVVLKLKSTIQGPVWSS 362
FAFD N+FL E KV + ++A FA +S + T ++K + TIQ V+ +
Sbjct: 207 FAFD-TANKFLTPKSGEQKKVPLPPSLVAGAFAGVSSTLCTYPLELIKTRLTIQRGVYDN 265
Query: 361 FLY 353
FL+
Sbjct: 266 FLH 268
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 31.1 bits (67), Expect = 0.74
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Frame = +3
Query: 309 VDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTT-----FDKVLKECEIWAKSQAK---- 461
VDK +ND E + K +N + + D N K T + + LKE E ++Q K
Sbjct: 395 VDKAVNDKSKEIQQKIENAMLEKKKLADMNEKLTKNQDIWRRTLKEIEERERAQLKLKDD 454
Query: 462 ----IPKQMRTFEDSQKSKKRLHL*SNAKEMRKG 551
+ +Q++ F+ S K +K + NA +++ G
Sbjct: 455 TIRDLEEQIKDFKFSIKLQKSIEKNKNADDLKGG 488
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 348 DKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKRLHL 521
DK K EL G I+D+ + T+DK L E W K+ +PK + S K+ L L
Sbjct: 1562 DKQKKELVFG--IIDYLRQYTWDKQL---ESWVKTSLFVPKNLSPTVSSPKTTTGLEL 1614
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = -2
Query: 293 YALVCNYKNQFKLLSSLYCSVKAL*LNVLLPERSCNIT-----LRIKAFTDGENISLVLW 129
Y L+CN+ FK ++ + ++LP N++ L++ F+ GEN+S++LW
Sbjct: 247 YLLLCNFL--FKAYGISRMNLVPSLMEIILPSLEKNLSWGHNPLKMLIFS-GENLSILLW 303
Query: 128 KH-HNTIP 108
K H +P
Sbjct: 304 KRVHEILP 311
>09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 348 DKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKK 509
DK K EL G I+D+ + T+DK L E W K+ +PK + S K K
Sbjct: 1459 DKQKKELVFG--IIDYLRQYTWDKQL---ESWVKTSLFVPKNLSPTVISPKEYK 1507
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 502 DFWESSKVLI-CFGILACDFAHISHSFSTLSKVV 404
DFW+ S V F + CD + HSF T + ++
Sbjct: 731 DFWKPSLVTFPSFQVSPCDIYRVPHSFRTTNMLI 764
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 297 QLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQM 476
+L +K LNDV + + + ++ N K D KE E K + + KQ+
Sbjct: 1420 ELDAREKKLNDVEASLKSEIDRHRK-----ININIKRKLDASAKEKEELTKEKQSLSKQL 1474
Query: 477 RTFEDSQKS 503
+ SQK+
Sbjct: 1475 EDLKSSQKT 1483
>12_02_0202 - 15465885-15466241,15466539-15468122
Length = 646
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 604 LCFTICKIFTFDYFDSXLPFLISFAFDHRCNRFLDFWESSKVLI 473
LC TIC FTF Y D F +A H ++F W K ++
Sbjct: 529 LCVTICDKFTFSYQDLNQQF---YATCHGVDKF-SVWRKLKEIV 568
>05_01_0539 +
4653028-4653158,4654329-4654973,4655323-4655448,
4655537-4655813,4655916-4656143
Length = 468
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -3
Query: 607 FLCFTICKIFTFDYFDSXLPFLISFAFDHRCNR---FLDFW 494
F I +FT F LPFLI + F RCN+ + FW
Sbjct: 22 FAVIPIVSVFTV--FLRKLPFLIIWCFSGRCNQLNSYATFW 60
>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +3
Query: 348 DKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKR 512
DK K+E G I+D+ + T+DK L E W K+ +PK S K K+
Sbjct: 1306 DKEKHEFVFG--IIDYLRQYTWDKQL---ETWVKTSLVVPKNASPTVISPKEYKK 1355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,698,397
Number of Sequences: 37544
Number of extensions: 279049
Number of successful extensions: 645
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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