Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0072
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical p...    30   1.2  
U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical p...    28   6.2  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +1

Query: 76  MLDLFSIFSKGGIVLWCFQSTSEIFSPSV-NALIRSVILQERSGNNTFNHNALTLQYKLD 252
           M++LFSIF+KGG+ LW +Q     F+ ++ N LI+  +++ER  +        T++++LD
Sbjct: 1   MIELFSIFTKGGVCLWNYQEGDYNFTEAINNELIKGTLMEERGNSGQKKVGNYTMKFQLD 60

Query: 253 KSLN 264
              N
Sbjct: 61  NEYN 64


>Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical
           protein B0035.16 protein.
          Length = 375

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 300 LSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFD 416
           +++V ++ NDV L+F + YKN   T P I D N    FD
Sbjct: 69  VNFVKEYWNDVFLKFLENYKNGRTTVPDI-DCNQSIKFD 106


>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 391 STIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWY 281
           +TIQ  +W+S   LS++S+     ++S   NW++ W+
Sbjct: 118 NTIQ-LIWNSIGNLSIHSEQIRWNDVSDISNWNIEWF 153


>Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical
           protein C27H6.4b protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 436 SHSFSTLSKVVLKLKSTIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKTSSN 257
           S S   L  V  KL+++   P  S++  +S    WTS+ + S Y +    WY   +   +
Sbjct: 32  SLSSGALKTVSFKLEASNSRP--STYKQMSRTRSWTSITSDSEYGDAEEDWYTDDRAFGD 89

Query: 256 S 254
           S
Sbjct: 90  S 90


>Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical
           protein F54D5.5b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 393 FNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDS 494
           F++    DKV KE + + K  ++  KQ+  F++S
Sbjct: 291 FHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNS 324


>Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical
           protein F54D5.5a protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 393 FNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDS 494
           F++    DKV KE + + K  ++  KQ+  F++S
Sbjct: 226 FHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNS 259


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 391 STIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWY 281
           +TIQ  +W+S   LS++S+     +++   NW++ W+
Sbjct: 92  NTIQ-LIWNSISNLSMHSENIRWNDIADISNWNIEWF 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,242
Number of Sequences: 27780
Number of extensions: 283348
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)