Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0072
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 538 SFAFDHRCNRFLDFWESSKVLICFGILACDFAHISHSFSTLSK 410
           SF  ++R  RFL   ES   L   GIL  D  + S    + +K
Sbjct: 355 SFVLNNRAGRFLILTESDTKLSSQGILGEDVENNSEVSKSRTK 397


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 334 WTSLRNLSTYDNWSMRWYATTKTSSNSYL 248
           WT LR+   +D+ + R+Y      +  YL
Sbjct: 454 WTVLRDKGHFDDGTTRFYTACVVEAFDYL 482


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 303 SYVDKFLNDVHLEFRDKYKNELQTGPCIV 389
           +Y+DK   D++LE   + K+      C++
Sbjct: 459 NYIDKETKDMNLEISTRPKSNTVENACVL 487


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 463 ILACDFAHISHSFSTLSKVVLKLKSTI 383
           IL C+   +S  FS L   +L L ST+
Sbjct: 664 ILKCNIQDMSFLFSQLYNALLILISTV 690


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 463 ILACDFAHISHSFSTLSKVVLKLKSTI 383
           IL C+   +S  FS L   +L L ST+
Sbjct: 754 ILKCNIQDMSFLFSQLYNALLILISTV 780


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 304 DNWSMRWYATTKTSSNSYLVCIVV 233
           D+ S RW A    S   +L+ IVV
Sbjct: 115 DDLSTRWIAFNCLSDTIFLIDIVV 138


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 304 DNWSMRWYATTKTSSNSYLVCIVV 233
           D+ S RW A    S   +L+ IVV
Sbjct: 115 DDLSTRWIAFNCLSDTIFLIDIVV 138


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 304 DNWSMRWYATTKTSSNSYLVCIVV 233
           D+ S RW A    S   +L+ IVV
Sbjct: 115 DDLSTRWIAFNCLSDTIFLIDIVV 138


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 280 HTNAYSSYHMWI 315
           +TN Y  Y++W+
Sbjct: 141 NTNKYKDYYIWV 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,448
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)