Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0071
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   5.0  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   8.8  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   8.8  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 163 PSLISVEFSGLSSTENILMEDRSSGXIYVGSLQPILVKVLMH 38
           PS IS+E     S  N++++   S  +YV  +  +L+ V++H
Sbjct: 58  PSSISIEKEIKISKGNVIVKAIRSWSLYVAIIAILLLLVILH 99


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 137 WALFYRKHFNGRQVFWXHICWELTTHFGESINA 39
           W + YRKH   + VF  H    + +   + INA
Sbjct: 138 WPVSYRKHVQRQDVFTVHELKRIESILEDLINA 170


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 476 INNFGQKSWKLTVQLTSSDVHINASLF 396
           +N+FG K W L  Q + ++V + A LF
Sbjct: 128 LNSFGTKEWHLFFQ-SYANVDVKAGLF 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,697
Number of Sequences: 5004
Number of extensions: 28191
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)