Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0071
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    30   1.1  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    30   1.1  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    30   1.1  
AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 488 LERKINNFGQKSWKLTVQLTSSDVH 414
           L++ INNFG K WK T  + SS +H
Sbjct: 547 LQKIINNFGDKLWKKTRLMISSWLH 571


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 488 LERKINNFGQKSWKLTVQLTSSDVH 414
           L++ INNFG K WK T  + SS +H
Sbjct: 547 LQKIINNFGDKLWKKTRLMISSWLH 571


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 488 LERKINNFGQKSWKLTVQLTSSDVH 414
           L++ INNFG K WK T  + SS +H
Sbjct: 547 LQKIINNFGDKLWKKTRLMISSWLH 571


>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 388 NSITIQHELKTY*LLCCCVVRCTNSALWYPKRQFVNTYSWCINXXXXXXXLVFVSR 221
           N+ T QHE K    L    V+C++ A+  P  Q   T+   +N        V+ S+
Sbjct: 254 NNTTWQHEFKKCLKLYTSEVKCSSLAIGKPSLQLKTTFGERMNVGKNVQTDVYFSQ 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,638,218
Number of Sequences: 27780
Number of extensions: 155356
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)