Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0070
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 5e-33
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 90 2e-18
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 79 4e-15
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 79 4e-15
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 73 3e-13
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 64 9e-11
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 3e-09
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 59 3e-09
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 56 3e-08
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 55 5e-08
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 54 2e-07
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 53 3e-07
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 52 5e-07
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 52 7e-07
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 50 2e-06
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 45 6e-05
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 45 6e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 8e-05
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 44 1e-04
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 44 1e-04
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 41 0.001
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 38 0.007
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 38 0.012
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 35 0.083
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 33 0.25
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 30 2.3
SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 29 3.1
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 29 3.1
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 5.4
SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 28 7.2
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 28 7.2
SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6) 28 7.2
SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 28 7.2
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 9.5
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 142 bits (345), Expect = 2e-34
Identities = 70/99 (70%), Positives = 84/99 (84%), Gaps = 6/99 (6%)
Frame = +2
Query: 230 TRNNALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQ 391
T+N+ + RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQ
Sbjct: 114 TKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQ 173
Query: 392 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
QIQKVV+ALGD+++ KCHACIGGTNVRED +LE GVHV
Sbjct: 174 QIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGVHV 212
Score = 115 bits (277), Expect = 4e-26
Identities = 57/77 (74%), Positives = 62/77 (80%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+DMI R L+ IKLFVLDEADEMLSRGFKDQI+DVF L VQV+LLSAT
Sbjct: 214 VGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLLSAT 273
Query: 691 MPDDVLEVSRCFMRDPV 741
MP DVLEV+ FMRD V
Sbjct: 274 MPTDVLEVTNKFMRDVV 290
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 111 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQD 257
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI PC Q+
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQE 100
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 138 bits (334), Expect = 5e-33
Identities = 63/84 (75%), Positives = 76/84 (90%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV+ALGD+++
Sbjct: 35 RDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDYMSV 94
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+CHACIGGTN+ EDIR+L+ G H+
Sbjct: 95 QCHACIGGTNIGEDIRKLDYGQHI 118
Score = 101 bits (243), Expect = 5e-22
Identities = 45/76 (59%), Positives = 61/76 (80%)
Frame = +1
Query: 514 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 693
GTPGRV+DMI RR L +IK+ VLDEADEML++GFK+QI+DV++ L QV+LLSAT+
Sbjct: 121 GTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATL 180
Query: 694 PDDVLEVSRCFMRDPV 741
P ++LE++ FM DP+
Sbjct: 181 PHEILEMTSKFMTDPI 196
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 201 GFEKPSAIQQRAIMPCIQ 254
GFEKPSAIQQRAI P ++
Sbjct: 16 GFEKPSAIQQRAIKPILK 33
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/56 (67%), Positives = 50/56 (89%)
Frame = +2
Query: 341 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G H+
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHI 56
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 79.0 bits (186), Expect = 4e-15
Identities = 35/78 (44%), Positives = 56/78 (71%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H+ A
Sbjct: 85 RDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMGA 144
Query: 437 KCHACIGGTNVREDIRQL 490
+ GGT++++DI +L
Sbjct: 145 QVMVTTGGTSLKDDILRL 162
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGRV D++ ++ + ++ V+DEAD++LS FK + + K L + Q++L SAT
Sbjct: 177 VATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSAT 236
Query: 691 MPDDVLEVSRCFMRDP 738
P V + +R P
Sbjct: 237 FPISVRDFKEKHLRKP 252
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 79.0 bits (186), Expect = 4e-15
Identities = 35/78 (44%), Positives = 56/78 (71%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H+ A
Sbjct: 85 RDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMGA 144
Query: 437 KCHACIGGTNVREDIRQL 490
+ GGT++++DI +L
Sbjct: 145 QVMVTTGGTSLKDDILRL 162
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGRV D++ ++ + ++ V+DEAD++LS FK + + K L + Q++L SAT
Sbjct: 177 VATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSAT 236
Query: 691 MPDDVLEVSRCFMRDP 738
P V + +R P
Sbjct: 237 FPISVRDFKEKHLRKP 252
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA- 436
D+IAQA+SGTGKT FS+ L+ + T Q +IL PTRE+A Q++ V+ A+G H +
Sbjct: 52 DLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYDGL 111
Query: 437 KCHACIGGTNVREDIRQLES 496
C IGG ++ ED + L+S
Sbjct: 112 ACKVFIGGISLEEDKKALKS 131
Score = 65.3 bits (152), Expect = 5e-11
Identities = 29/80 (36%), Positives = 50/80 (62%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C VGTPGRV +I ++ L ++++F+LDEAD++L F+ QI+ +F L + Q++
Sbjct: 132 CHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQMMA 191
Query: 679 LSATMPDDVLEVSRCFMRDP 738
SAT P+ + + +M +P
Sbjct: 192 FSATYPEVLANHLKKYMTEP 211
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F + L LLRG+ GFEKPS IQ +AI
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAI 44
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 64.5 bits (150), Expect = 9e-11
Identities = 33/84 (39%), Positives = 48/84 (57%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + ALG +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
KC +GG ++ L H+
Sbjct: 62 KCAVIVGGIDMMSQALMLAKKPHI 85
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGF--KDQIHDV 642
+ TPGR+ D + + T+K V+DEAD +L+ F +D IH V
Sbjct: 87 IATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEDYIHRV 133
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 61.3 bits (142), Expect = 8e-10
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
RD++A AQ+G+GKTA + + +L Q ++ R AL +APTRELA+QI
Sbjct: 517 RDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFS 576
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVH 505
DH K C GG +V QLE G H
Sbjct: 577 DHTPIKVCVCYGGVSVPYQASQLERGCH 604
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 666
C VGTPGR+ D ++R ++ +I+ +LDEAD ML GF IH + + +
Sbjct: 603 CHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMTAKESR 662
Query: 667 QVILLSATMPDDVLEVSRCFMR 732
Q ++ SAT PD++ ++ F++
Sbjct: 663 QTLMFSATFPDEIQHLAGSFLK 684
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 59.7 bits (138), Expect = 3e-09
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ DM+ R + VLDEAD ML GF+ QI + + D Q ++ SAT
Sbjct: 187 IATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWSAT 246
Query: 691 MPDDVLEVSRCFMRDPV 741
P +V ++ F+ D V
Sbjct: 247 WPKEVQGLAHDFLSDYV 263
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 359 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
L+L PTRELAQQ+Q+V ++G H + GG IR+LE GV +
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEI 185
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Frame = +1
Query: 484 PTGEWCS--CXVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS-RGFKDQIHDVFKM 651
P G+ C+ +GTPG + D I + + + +FVLDEAD M++ +G +DQ + K
Sbjct: 215 PRGQKCTDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKS 274
Query: 652 LSADVQVILLSATMPDDVLEVSRCFMRDPV 741
L D QV+L SAT +DV++ + + +P+
Sbjct: 275 LHKDCQVLLFSATYDEDVMKFAETVVPNPI 304
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +2
Query: 251 PRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 427
P ++IAQ+QSGTGKTA F +++L ++D + Q + L+PT ELA+Q KV A+G H
Sbjct: 141 PPVNMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQDAMLSL 272
++F+++ L L RG+Y GF KPS IQ+ A+ + D +++
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNM 145
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHL 430
+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK + LG
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRFT 378
Query: 431 NAKCHACIGGTNV 469
K +GG +V
Sbjct: 379 GLKSSVILGGDSV 391
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH---DVFKMLSADV- 666
C V TPGR+ DM+ R + ++I+ VLDEAD ML GF+ QI D M +
Sbjct: 976 CHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPKTGIR 1035
Query: 667 QVILLSATMPDDVLEVSRCFMRD 735
Q ++ SAT P ++ ++R F+ +
Sbjct: 1036 QTLMFSATFPKEIQMLARDFLEN 1058
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQI 331
+RD++A AQ+G+GKTA F I IL +I
Sbjct: 912 KRDLMACAQTGSGKTAAFLIPILSRI 937
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D++L E LL + G++KP+ +Q+ AI
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI 906
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++ N
Sbjct: 86 DIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNI 145
Query: 437 KCHACIGGTNVREDIRQLES 496
K GG N+++D + L++
Sbjct: 146 KIAVFFGGINIKKDQQTLKT 165
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 615
VGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 172 VGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQDAMLSL 272
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++ N
Sbjct: 86 DIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNI 145
Query: 437 KCHACIGGTNVREDIRQLES 496
K GG N+++D + L++
Sbjct: 146 KIAVFFGGINIKKDQQTLKT 165
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 615
VGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 172 VGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQDAMLSL 272
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML----SADV 666
C+ VGTPGR+ D I + + ++ +LDEAD ML GF+ I + + + ++
Sbjct: 839 CNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSER 898
Query: 667 QVILLSATMPDDVLEVSRCFMRD 735
Q ++ SAT P+++ ++ F+ D
Sbjct: 899 QTLMFSATFPEEIQRLAGDFLND 921
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI------DTSIREC---QALILAPTRELAQQIQKVV 409
RDV+A AQ+G+GKTA F + ++ + +S E QA+ +APTRELA QI
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEA 808
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ C GG +V +RQL+SG ++
Sbjct: 809 RKFAHGTMLRPVVCYGGVSVSHQLRQLQSGCNL 841
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/77 (35%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ ++I+R+A+ + V+DE D ML GF+ Q+ + + LS Q +L SAT
Sbjct: 260 VATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQTMLFSAT 319
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + ++ + PV
Sbjct: 320 IPPSIEAMASRLLNAPV 336
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/84 (36%), Positives = 46/84 (54%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD I A++G+GKTA F++ ILQ++ A++L PTRELA QI LG +
Sbjct: 45 RDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRPIGL 104
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
K +GG ++ + L + HV
Sbjct: 105 KEAVIVGGLDMMKQALSLANKPHV 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 511 VGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
+ TPGR+ D I + L+ I+ VLDEAD +L F D + +F + Q +L SA
Sbjct: 130 IATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSA 189
Query: 688 TMPDDVLEVSR 720
T+ D + E+ +
Sbjct: 190 TLTDTMGELQK 200
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 9/79 (11%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQKVV 409
RD+I A++G+GKTA F+I +L I + + + ALILAPTRELAQQI++ +
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEI 198
Query: 410 IALGDHLNAKCHACIGGTN 466
+ G L + + IGG +
Sbjct: 199 LKFGRPLGIRTVSVIGGAD 217
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
RDV+ A++G+GKT F I I++ Q TS+ AL+++PTRELA Q +V++ +G+
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGN 147
Query: 425 HLNAKCHACIGGTNVREDIRQL 490
+ IGG +++ + +++
Sbjct: 148 KHDLSAGLIIGGKDLKNEQKRI 169
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
V TPGR+ + ++++ VLDEAD +L GF ++ + + L ++ Q +L SA
Sbjct: 176 VCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTLLYSA 235
Query: 688 TMPDDVLEVSRCFMRDPV 741
T V +++R ++ V
Sbjct: 236 TQTRSVKDLARLSLQSYV 253
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD-----VQVI 675
VGTPGR+ D + + L + +K VLDE D ML GF + + +V A+ Q +
Sbjct: 200 VGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAEDREDKPQTL 259
Query: 676 LLSATMPDDVLEVSRCFMR 732
L SAT+P + ++ +M+
Sbjct: 260 LFSATLPPWAVNTAKKYMK 278
Score = 49.2 bits (112), Expect = 4e-06
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 227 ATRNNALHPRRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELA 388
A+ N ++ DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA
Sbjct: 101 ASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELA 160
Query: 389 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+Q+ L +L C GG + SG+ V
Sbjct: 161 KQVGNEFENLKSNLEVYC--IYGGMPYEPQENAINSGLDV 198
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Frame = +1
Query: 556 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ---VILLSATMP-DDVLEVSRC 723
L +IK+ VLDEADEML++GFK+QI+DV++ L Q V L ++P + L + C
Sbjct: 31 LDTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQNSYVEYLHESVPKSEPLSSNSC 90
Query: 724 FMRDPV 741
DP+
Sbjct: 91 SPGDPL 96
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFS----ISILQQIDTSIRECQ-ALILAPTRELAQQIQKVVIALG 421
RD+I A++G+GKTA F + I+ Q + + + LI APTREL QQI G
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
N A GG N E + L+ G +
Sbjct: 615 KAYNIHVVAVFGGGNKYEQSKALQEGAEI 643
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 493 EWCSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 648
E V TPGR+ D + +A + + + V DEAD M GF FK
Sbjct: 639 EGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFALLFSATFK 690
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +2
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
++ KCHACIGGTNVRED +LE GVHV
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVHV 27
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 511 VGTPGRVYDMITRRAL 558
VGTPGRV+DMI R L
Sbjct: 29 VGTPGRVFDMINRGVL 44
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 511 VGTPGRVYDMI--TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 684
+ TPGR+ D + T+ L+ N ++ V+DEAD +L GF++++ + ++L + Q +L S
Sbjct: 699 IATPGRLLDHLQNTQGFLYKN-LQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTVLFS 757
Query: 685 ATMPDDVLEVSRCFMR 732
AT +V ++++ ++
Sbjct: 758 ATQTKNVEDLAKLSLK 773
Score = 44.8 bits (101), Expect = 8e-05
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQ---QIDTSIRE-CQALILAPTRELAQQIQKVVIALGD 424
RD++ A++G+GKT F + +++ ++ R +I++PTREL+ Q V L
Sbjct: 610 RDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARDLLK 669
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
H N +GG N + + +L+ GV++
Sbjct: 670 HHNFTYGIIMGGVNRKAEAERLQKGVNL 697
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 574 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 741
+ VLDEAD M+ GF++ + +F + Q +L SATMP + ++ + PV
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPV 73
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 574 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 741
+ VLDEAD M+ GF++ + +F + Q +L SATMP + ++ + PV
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPV 73
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 44.8 bits (101), Expect = 8e-05
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDT--------------SIRECQ-----ALI 364
AL RD+I A++G+GKT F I I+Q I+ S E Q ALI
Sbjct: 164 ALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALI 223
Query: 365 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 493
+APTRELA Q++ ++ + + K A +GG + R L+
Sbjct: 224 MAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLK 266
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 541 ITRRALHANTIKLF---VLDEADEMLSRGFKDQIHDVFKML 654
+T + H + I+L V+DEAD M+ +G +++ + +++
Sbjct: 327 VTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +1
Query: 571 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 741
+++ VLDEAD ML GF I V L A Q +L SAT DD+ ++ + +P+
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPL 60
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 514 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 654
GTPG++ D IT + + +K F+LDEAD +L++G D I ++ +
Sbjct: 141 GTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 511 VGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHD--------VFKMLS 657
V TPGR+ DM+T R + VLDEAD M GF+ QI + +
Sbjct: 199 VCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKVMRIIDCIR 258
Query: 658 ADVQVILLSATMPDDVLEVSRCFMRDPV 741
D Q ++ SAT P + ++R + P+
Sbjct: 259 PDRQTVMFSATFPRQMEALARKILDKPI 286
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 344 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
R+ A+++ PTRELA QI + N +C GGT + E I +L+ G +
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEI 197
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 394
+DV A A +GTGKTA F + IL+++ T + L++ PTRELA Q
Sbjct: 48 KDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 397
RD+I A++G+GKT +S+ + + T ALIL PTREL QQ+
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 37.5 bits (83), Expect = 0.012
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTS---------IRECQALILAPTRELAQQIQKV 406
R VI AQ+G+GKT + ++ ++ ++ +A I+ P RELA QI K
Sbjct: 415 RHHVICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQILKT 474
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 502
+L H + IGG + LES V
Sbjct: 475 AKSLCHHARFRSVGLIGGRKQKWMRDDLESPV 506
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 34.7 bits (76), Expect = 0.083
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +1
Query: 511 VGTPGRVYDMITRR--ALHANTIKLFVLDEADEMLSR---GFKDQIHDVFKMLS-ADVQV 672
V TP R+ ++T+ + + ++ +LDEAD++ GF++QI +++ + D+
Sbjct: 261 VTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDIHR 320
Query: 673 ILLSATMPDDVLE 711
L SAT+ + + E
Sbjct: 321 GLFSATLSNGIEE 333
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLN 433
+ ++ ++++GTGK+ F +L + R +I+ PTRELA Q + +V LGD
Sbjct: 198 KSLLIKSETGTGKSLVF---LLPSVQDPGRGYGTIIVVPTRELASQMLYEVSRLLGD--K 252
Query: 434 AKCHACIGGTNVREDIRQLESGVH 505
+ + + G ++ + L+ +H
Sbjct: 253 SIVASFVSGVDLSRQEKLLKDSLH 276
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 21 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 191
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 192 YAYGFEKPSA 221
GF + A
Sbjct: 79 LLDGFPRTVA 88
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 616 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 741
GF+ +I + + D Q ++ SAT P V ++ +M DPV
Sbjct: 2 GFEPEIKKILLDIRPDRQTVMTSATWPPGVQRMADQYMTDPV 43
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +1
Query: 517 TPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 696
TP + + ++R + A + L V+DEA + L Q+ + + +V+ LSAT
Sbjct: 213 TPQVLQNDLSRGSCAAADVVLLVVDEAHKALGNHSYCQVVREILSYTTNFRVLALSATPG 272
Query: 697 DDVLEVSRCFMRDPVPH 747
DD+ V + + H
Sbjct: 273 DDIKAVQQVLTNLLISH 289
>SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 287 FLTGLER*HRVLDARHYCALLDCRRFFKTIGVYASQQFFFEVH 159
FLT R +++ + RH C D F K Y +FFF+VH
Sbjct: 80 FLTFATRLYKLSEPRHIC--WDETHFGKHANFYIKGEFFFDVH 120
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 3 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 182
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 265 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 323
Query: 183 RG--IYA--YGFEKPSAIQQRAIMPCIQDAMLSLKPSQELEKLLLSLYRFYNK 329
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 324 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 375
>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
Length = 325
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 3 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 182
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 183 RG--IYA--YGFEKPSAIQQRAIMPCIQDAMLSLKPSQELEKLLLSLYRFYNK 329
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 60 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 188
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 393
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 3 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 182
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 183 RG--IYA--YGFEKPSAIQQRAIMPCIQDAMLSLKPSQELEKLLLSLYRFYNK 329
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 423
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 3 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 182
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 183 RG--IYA--YGFEKPSAIQQRAIMPCIQDAMLSLKPSQELEKLLLSLYRFYNK 329
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 326 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 454
Q D++++E IL ELA++IQK++ LN K AC+
Sbjct: 58 QGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 3 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 95
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SKTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 342
SKT+ Y S + NW +C+ +++ T +Y H
Sbjct: 155 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 183
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SKTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 342
SKT+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SKTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 342
SKT+ Y S + NW +C+ +++ T +Y H
Sbjct: 124 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 152
>SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6)
Length = 362
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SKTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 342
SKT+ Y S + NW +C+ +++ T +Y H
Sbjct: 196 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 224
>SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SKTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 342
SKT+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 442 AFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACID 329
A ++Q +TK+Y HL+N+ G +++ T C D
Sbjct: 201 AHALQTLTKAYRHLMNVTGN---RDKEEKANATEQCAD 235
>SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SKTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 342
SKT+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SKTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 342
SKT+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 45 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 176
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 45 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 176
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 197 GVYASQQFFFEVHVIEGFDNLIPVGVKC 114
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,263,532
Number of Sequences: 59808
Number of extensions: 598987
Number of successful extensions: 2498
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2479
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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