Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0069
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    28   1.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   3.3  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   4.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.6  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 348 KRTVFFFFYYCFDEISIGTRFCDDRFYELMFNEFII 241
           KR   FF    FD++ +G +   D F   +FN F++
Sbjct: 433 KRNGVFFDLKYFDQVVVGLKEVKDAFSFFIFNRFVL 468


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 241  PHIKNKFKGDCERFVSFFYEIS 176
            P ++ KF+G  E  V+FFY ++
Sbjct: 1212 PELRKKFEGQPEHVVNFFYYVA 1233


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 493 RKQWNNYDIKIYQNVFHLTLPATL-ISNSN 407
           RK+W N + K ++N  HL   ++  +SNS+
Sbjct: 223 RKEWTNREEKYFENQLHLVKASSSDVSNSS 252


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 291 RFCDDRFYELMFNEFIIPISKISLRAIVNVL 199
           R  D + Y+++   F+  + +ISL +IVN+L
Sbjct: 40  RMQDRKGYDVLIKVFVNKLPEISLSSIVNLL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,740
Number of Sequences: 5004
Number of extensions: 54414
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)