Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0068
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    31   0.69 
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.1  
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188...    28   6.4  
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597...    28   8.5  

>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 643 SPTYATXSHVSLQCQTRVNSTGSSFPADSPKPVPLAVVSLDSR*GSGNL 497
           +P Y+  S ++++C++R   + + F ADS  P  +AV+   S+   G +
Sbjct: 190 TPHYSNKSLITIRCRSRFTCSCNQFHADSTVPEQMAVMGAVSKARDGKI 238


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 470 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 369
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>07_01_0252 +
           1883709-1885306,1886338-1886466,1887319-1887341,
           1887455-1888023
          Length = 772

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -1

Query: 679 VSGFSATIARNRSPTYATXSHVSLQCQTRVNSTGSSFPADSPK------PVPLAVVSLDS 518
           V+GF  T    R+P +A     +L      N++G   P + P       P PLAV+ L S
Sbjct: 81  VAGFRRTRVGARAPRFAVDGVRNLTALEVFNASGFPLPGEMPAWFGRGLPPPLAVLDLRS 140

Query: 517 R*GSGNL 497
              +G L
Sbjct: 141 AAVNGTL 147


>03_04_0169 -
           17959262-17959304,17959441-17959532,17959682-17959759,
           17959938-17960075,17960174-17960302,17960556-17960685,
           17960797-17960974,17961177-17961315,17961399-17961488,
           17961633-17961794,17961966-17962130,17962250-17962387,
           17962827-17963006,17963405-17963533,17963878-17964113,
           17964233-17964395,17965260-17965628,17965724-17965828
          Length = 887

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 236 AIGTILSTAVQRSAQNWHGQGESDCLIKTK 325
           A+G I+ TA    A+ WH QG+S  L++T+
Sbjct: 417 AVGQIVFTA--DDAEAWHAQGKSVILVRTE 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,120,859
Number of Sequences: 37544
Number of extensions: 388292
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)