Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0068
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    27   0.13 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    27   0.13 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    27   0.13 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    27   0.13 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.41 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 670 FSATIARNRSPTYATXSHVSLQCQTRVNSTGSSFPADSP 554
           F+  I RN +  Y    H+ L CQ R+N     FP D P
Sbjct: 164 FALRIYRNGTVNYLMRRHLILSCQGRLN----IFPFDDP 198


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 670 FSATIARNRSPTYATXSHVSLQCQTRVNSTGSSFPADSP 554
           F+  I RN +  Y    H+ L CQ R+N     FP D P
Sbjct: 164 FALRIYRNGTVNYLMRRHLILSCQGRLN----IFPFDDP 198


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 670 FSATIARNRSPTYATXSHVSLQCQTRVNSTGSSFPADSP 554
           F+  I RN +  Y    H+ L CQ R+N     FP D P
Sbjct: 215 FALRIYRNGTVNYLMRRHLILSCQGRLN----IFPFDDP 249


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 670 FSATIARNRSPTYATXSHVSLQCQTRVNSTGSSFPADSP 554
           F+  I RN +  Y    H+ L CQ R+N     FP D P
Sbjct: 164 FALRIYRNGTVNYLMRRHLILSCQGRLN----IFPFDDP 198


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 206 P*GR-VGFVSCAIGTILSTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 382
           P GR V  +   IGT ++ AV      +  +G+    + +  C    G   +V   +C+E
Sbjct: 205 PTGREVALIEQTIGTCVANAVVIEQPTFLCKGDGKWYLPSGGCHCKPGYQADVEKQECTE 264

Query: 383 CQREEIQASAG 415
           C   + +  AG
Sbjct: 265 CPIGKFKHEAG 275


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 667 SATIARNRSPTYATXSHVSLQCQ 599
           S T+ RN++  Y+   H  + CQ
Sbjct: 95  SVTLYRNKTVKYSARMHAIIACQ 117


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 255 DRIVPIAHETKPTRPYG*EDPRKAGERGSGSS-PK 154
           DR+  + H     +     +P K+ E  +GSS PK
Sbjct: 335 DRLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPK 369


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 635 SGRSVSRDRR*KTTNFHCFINLTRL 709
           SG ++ ++++   +++H + NLT L
Sbjct: 447 SGLNLEQEKKDSISHYHLYTNLTAL 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,572
Number of Sequences: 438
Number of extensions: 4181
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)