Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0067
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    51   1e-08
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    51   1e-08
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 25/77 (32%), Positives = 42/77 (54%)
 Frame = +1

Query: 34  AGGSAGFVEVCIMHPLDLVKTRLQIQSNKSAMKPSDPHYYSGIIDCMKKMYRYEGFTSFW 213
           AGG A  +    + P++ VK  LQ+Q     +  S+   Y G+IDC  ++ + +GF S+W
Sbjct: 16  AGGVAAAISKTTVAPIERVKLLLQVQHISKQI--SEEQRYKGMIDCFVRIPKEQGFLSYW 73

Query: 214 KGILPPILAETPKRLLN 264
           +G L  ++   P + LN
Sbjct: 74  RGNLANVIRYFPTQALN 90



 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 19/73 (26%), Positives = 40/73 (54%)
 Frame = +1

Query: 1   KLLKQAAMQIGAGGSAGFVEVCIMHPLDLVKTRLQIQSNKSAMKPSDPHYYSGIIDCMKK 180
           + L+     + +GG+AG   +C ++PLD  +TRL     K+         ++G+ +C+ K
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA----GGEREFTGLGNCLTK 165

Query: 181 MYRYEGFTSFWKG 219
           +++ +G T  ++G
Sbjct: 166 IFKADGITGLYRG 178



 Score = 25.8 bits (54), Expect = 0.44
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 536 VFNMVYFGFYHSVKGYVPE 592
           ++   YFGFY + +G +P+
Sbjct: 188 IYRAAYFGFYDTARGMLPD 206


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 25/77 (32%), Positives = 42/77 (54%)
 Frame = +1

Query: 34  AGGSAGFVEVCIMHPLDLVKTRLQIQSNKSAMKPSDPHYYSGIIDCMKKMYRYEGFTSFW 213
           AGG A  +    + P++ VK  LQ+Q     +  S+   Y G+IDC  ++ + +GF S+W
Sbjct: 16  AGGVAAAISKTTVAPIERVKLLLQVQHISKQI--SEEQRYKGMIDCFVRIPKEQGFLSYW 73

Query: 214 KGILPPILAETPKRLLN 264
           +G L  ++   P + LN
Sbjct: 74  RGNLANVIRYFPTQALN 90



 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 19/73 (26%), Positives = 40/73 (54%)
 Frame = +1

Query: 1   KLLKQAAMQIGAGGSAGFVEVCIMHPLDLVKTRLQIQSNKSAMKPSDPHYYSGIIDCMKK 180
           + L+     + +GG+AG   +C ++PLD  +TRL     K+         ++G+ +C+ K
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA----GGEREFTGLGNCLTK 165

Query: 181 MYRYEGFTSFWKG 219
           +++ +G T  ++G
Sbjct: 166 IFKADGITGLYRG 178



 Score = 25.8 bits (54), Expect = 0.44
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 536 VFNMVYFGFYHSVKGYVPE 592
           ++   YFGFY + +G +P+
Sbjct: 188 IYRAAYFGFYDTARGMLPD 206


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 132 FHC*FVTLYLKPSLDQIQWVHNTHFHK 52
           FH      YLKPS D  +    TH  K
Sbjct: 402 FHQEMALYYLKPSYDAQEPAWKTHVWK 428


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 330 FSLAGLGAGITEAVLVNPFEVVKVTLQSNKSLATEIPSTW-SVTRQIVRE 476
           FSL GLG+G   +V        +    SN+ +  +    W  V  ++VR+
Sbjct: 1   FSLGGLGSGFANSVKELRNLAQQAFAHSNQLIIDKSLKGWKEVEYEVVRD 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,371
Number of Sequences: 438
Number of extensions: 5699
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)