Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0066
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 69 6e-13
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 54 3e-08
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 48 1e-06
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 48 2e-06
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 43 6e-05
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 42 1e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 41 2e-04
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 38 0.001
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 31 0.28
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 29 0.84
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 29 0.84
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 2.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.4
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 26 7.8
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 7.8
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 69.3 bits (162), Expect = 6e-13
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +1
Query: 316 YCICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKT 480
YCIC+ D +M+ CD CE+W+HG C+NI E + YFC +C EE + T
Sbjct: 120 YCICQKPDDGSWMLGCDGCEDWFHGTCVNIPESYNDLTVQYFCPKCTEEGKGITT 174
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 265 PERQSKITTLLNQAGQAYCICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFC 444
P+ + ++T + + G +C CR +S MI C+ C EWYH C+ +S+++ + + + C
Sbjct: 1082 PDSEGRLT-IRKKKGCIFCFCRLPESG-VMIECEICHEWYHAKCLKMSKKKLRQDEKFTC 1139
Query: 445 DRC--REEDPTLKTR 483
C R E P L R
Sbjct: 1140 PICDYRVEIPRLSNR 1154
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 289 TLLNQAGQAYCICRSSDSSR-FMIACDACEEWYHGDCINISERESKYIKNYFCDRCREE 462
TL+ + + C+C S R I C CE +H DC+ ++ + + + C C E+
Sbjct: 1346 TLVKEKNSS-CLCGEEFSPRDSFIDCTICERRFHYDCVGLNNEIADSVSKFTCPICMEQ 1403
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 295 LNQAGQAYCICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCR 456
L + G+ C + ++ CD CE YH C++ S ++++CD C+
Sbjct: 264 LIERGEQCEYCGLDKNPETILLCDGCEAAYHTSCLD-PPLTSIPKEDWYCDACK 316
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 48.4 bits (110), Expect = 1e-06
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 316 YCICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
YC CR ++ MI C+ C EWYH C+ +S+++ + + + C C
Sbjct: 1173 YCFCRQPEAG-MMIECELCHEWYHAKCMKMSKKKLRADEKFICPIC 1217
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 298 NQAGQAYCICRSSDS-SRFMIACDACEEWYHGDCINISERESKYIKNYFC-DRCREEDPT 471
+Q C+CR + S + C C EW+H +C+ +S + NY C D C +E
Sbjct: 1450 DQNASVICLCRQPFAISDGTVQCHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSKEGKL 1509
Query: 472 LKTRFRPQ 495
RP+
Sbjct: 1510 YPWNTRPR 1517
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 48.0 bits (109), Expect = 2e-06
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 319 CICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCR 456
C+C D F I C++CE W H C+NI + + YFC++C+
Sbjct: 6 CVCPFEDDDGFTIQCESCEVWQHAVCVNID--ANNVPEKYFCEQCQ 49
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 42.7 bits (96), Expect = 6e-05
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 319 CICRSS-DSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCR-EEDPTLKTRFRP 492
C+C+S D + CD C+ W H C+ +++++ ++Y+C+ C D + + + P
Sbjct: 23 CVCKSQEDIGDTWVQCDGCDCWQHASCVGLADKDIP--ESYYCEVCHSRSDVSSQVQNSP 80
Query: 493 QKRE 504
K E
Sbjct: 81 NKDE 84
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +1
Query: 331 SSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKTRFRPQKRENG 510
+SD + I CD C W HG+C+ ++ ES+ + Y+C+ C E + R R K+
Sbjct: 62 ASDGGLY-IQCDQCSVWQHGNCVGFAD-ESEVPEVYYCEICHPEFHKVYQRGRGAKQSKY 119
Query: 511 LILVEMIEKS 540
L + IE S
Sbjct: 120 LGNGKPIEAS 129
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 322 ICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC----REEDPTLKTRFR 489
IC SD + ++ CD C++ YH C+N+ ++ I+ ++C C +E+ TL +R
Sbjct: 127 ICGRSDHAEVLLLCDGCDDAYHTYCLNM---DAVPIEEFYCPNCVLLNYQENETLSSRIS 183
Query: 490 PQKR 501
+R
Sbjct: 184 LSRR 187
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 38.3 bits (85), Expect = 0.001
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Frame = -3
Query: 522 DQNQPVFSFLWSEPCLQSRIF-LSTSVTEVILDV--L*FSLRNVDT-ITMIPFLAC-ITC 358
D N + S L LQS +S+ ++ ++ L F+ +N+ T +TM+ L +T
Sbjct: 76 DLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTA 135
Query: 357 YHKSRTIRRSTNAVRLSSLIQ---QCCNFGLAFRQVERLAMSALDCLDFLSPI---VFPL 196
Y K RT+R++ SL+Q Q NF +R VER+A + +F VF
Sbjct: 136 YEKLRTLRQNQKFGEAISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDT 195
Query: 195 FQNRF 181
FQ++F
Sbjct: 196 FQSQF 200
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 30.7 bits (66), Expect = 0.28
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 328 RSSDSSRFMIACDACEEWYHGDCIN 402
+S+ S+ ++ACD C ++H DC+N
Sbjct: 414 KSALVSQSILACDYCNSYWHPDCLN 438
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 319 CICRSSDSSRFMIACDACEEWYHGDCINI-SERESKYIKNYFCDRC 453
C C S M C+ C+ W H C S+ + + C C
Sbjct: 337 CECGDSTEDSEMFQCERCDGWVHCACYGFESDSDPRQPNQLLCYTC 382
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 292 LLNQAGQAYCICRSSDSSRFMIACDACEEWYHGDCI 399
LLN+ +C+ + F + C C+++YH DC+
Sbjct: 255 LLNEPSNCK-VCKKWCAFDFSVQCADCKKYYHMDCV 289
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Frame = +1
Query: 316 YCICRS----SDSSRFMIACDACEEWYHGDCI-----NISERESKYIKNYFCDRCREE 462
+CIC + M C CE+W+H C+ I+ +++ + C C E+
Sbjct: 122 FCICDTVYNPETEEGTMFQCILCEDWFHEKCLQKTNKGIAIPDAETFEWLVCSECSEK 179
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/73 (23%), Positives = 27/73 (36%)
Frame = -3
Query: 579 WKIYFPNDPFLSAAFFDHLDQNQPVFSFLWSEPCLQSRIFLSTSVTEVILDVL*FSLRNV 400
W N P + F +L+ QP + W P L + S +IL+ N
Sbjct: 436 WYFTVYNSPTIYTPNFHYLEGTQPARAAKWCAPALAGAVASFISFLALILEAYFVPRNNP 495
Query: 399 DTITMIPFLACIT 361
+IP L ++
Sbjct: 496 GAQPVIPRLIFVS 508
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 218 YHPLYSLYFKTDSMTLTTASTQG 150
Y PL L F D M L TAS G
Sbjct: 118 YQPLTILKFSNDGMVLFTASNDG 140
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 366 ITCYHKSRTIRRSTNAVRLSSLIQQCCNFGLAFRQVERLAMSAL 235
I+CY + + S + R+ +++ NFGL V + +AL
Sbjct: 146 ISCYFEHNFLNASVPSYRIDYHLERLINFGLKVAVVRQTETAAL 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,285
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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