Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0066
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.89 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   2.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 780 GAPSLIATAGWFRRXFNF*HKLS 712
           G PS I+  G FRR +N   KLS
Sbjct: 542 GKPSRISKQGLFRRFYNLLGKLS 564


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 163 LAPKEVFIFYLTNFILFSNK 104
           L  + +F+ Y+TNFI++S +
Sbjct: 136 LYEESLFVPYITNFIIYSKR 155


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +1

Query: 370 CEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKTRFRP 492
           C+E     C+ +  R    +  Y C   R+E+   K + +P
Sbjct: 239 CQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKP 279


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 682 SHI*TSPHMHHNGHNRNP 629
           SHI  +PH HH+ H   P
Sbjct: 424 SHIHATPH-HHHSHAATP 440


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -2

Query: 667 SPHMHHNGHNRNPVSNPGQSPQP 599
           SPH       R    NP Q P P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,101
Number of Sequences: 438
Number of extensions: 4337
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)