Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0064
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 56 5e-09
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 29 0.49
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 3.4
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 26 6.0
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 6.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 6.0
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 6.0
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|... 25 7.9
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 56.0 bits (129), Expect = 5e-09
Identities = 28/44 (63%), Positives = 29/44 (65%)
Frame = +2
Query: 113 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 244
K EHINLKV+GQDN V FKIKK T KLM YC R G SM
Sbjct: 30 KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSM 73
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 256 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 357
F DG+ I + TP L+ME+GD IE +Q GG
Sbjct: 78 FLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 29.5 bits (63), Expect = 0.49
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 679 FNYCSTTTVLP-FVDVSTKHITMEIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLLCSQ 503
F LP F ++ +++T + Y + TYN P + T + S+ ++ +
Sbjct: 265 FQIWMRAAALPTFSKLALRNVTTALQPGIYEMNITYNFPVTEYKGTKTIMFSTTSVIGGK 324
Query: 502 NYFLTLL 482
NYFL +L
Sbjct: 325 NYFLGIL 331
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 418 LILTHWRWSILKIIKFTLGTLLR 350
L+ H RWS +++ K+ LGT +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 6.0
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +2
Query: 2 CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 157
CH R L QI N++ S++ + F IN+K A + K ++ HI + G+
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184
Query: 158 NAIVQFKIKKHTPLRKLMNAYCDR 229
NA+V+ KI K ++ + CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 211 HQFPERCVFLYFELYNCV 158
H+FP C+F F YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 178 FELYNCVILT*YFQINVFVFSLLFI 104
+E+YN +I + Y INV F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 211 HQFPERCVFLYFELYNCV 158
H+FP C+F F YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 589 IWYTYNLPYHKLFETHNALRSSAMLLCSQNYFLTLL 482
++Y + L E H + +SA LL + NY L LL
Sbjct: 52 VFYILIMIIQHLKEIHYLISASAKLLLASNYLLELL 87
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 57 SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 170
+F+ + +LIS +L+K EK+N L K+ V I LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378
>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
Med31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 640 DVSTKHITMEIVEVTYSIWYTYNLPYHKLFE 548
D S I +E V++ + WY L HK FE
Sbjct: 13 DKSRFEIELEFVQMLSNPWYLNFLAQHKYFE 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,405
Number of Sequences: 5004
Number of extensions: 52892
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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