Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0064
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 58 9e-09
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 56 3e-08
07_03_0990 + 23173868-23174200 35 0.054
07_03_0989 + 23161020-23161412 35 0.054
01_04_0034 + 15318509-15319567 34 0.13
07_03_0988 + 23160028-23160360 33 0.22
02_02_0734 + 13500808-13500932,13501194-13501273,13501499-135015... 30 1.5
08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438... 29 2.7
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 29 2.7
01_01_0771 - 5982826-5983327,5983424-5984772 28 6.2
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +2
Query: 113 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 253
+G HINLKV GQD V F+IK+ T L+KLMNAYCDR + M +
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAI 61
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 253 AFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 357
AF FDG+ + TP LEME+GD I+ QTGG
Sbjct: 62 AFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Frame = +2
Query: 104 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 253
DEKK G HINLKV GQD V F+IK+ T L+KLMNAYCDR + ++ +
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSI 62
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 253 AFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 357
AF FDG+ +N TP LEME+GD I+ QTGG
Sbjct: 63 AFLFDGRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>07_03_0990 + 23173868-23174200
Length = 110
Score = 35.1 bits (77), Expect = 0.054
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 256 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 363
F +DG+ ++ TP L+ME+GD ++ +++ GG +
Sbjct: 75 FLYDGRRLSGWQTPAELDMEDGDEVDFFEELIGGAA 110
>07_03_0989 + 23161020-23161412
Length = 130
Score = 35.1 bits (77), Expect = 0.054
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 256 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 363
F FDG+ + TP L+ME+GD + +++ GG +
Sbjct: 83 FLFDGRRLRGWQTPAELQMEDGDEVNFFEELIGGAA 118
>01_04_0034 + 15318509-15319567
Length = 352
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 247 GSAFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTG 354
G ++G+ + ++ TP L++E+GDTI +Q G
Sbjct: 317 GCVLIYEGRRVQDSQTPDDLKLEDGDTIHAIARQVG 352
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 247 GSAFRFDGQPINENDTPTSLEMEEGDTIEVYQQQT 351
G F G+ + N TP +ME+GD + + T
Sbjct: 72 GGVFMHYGRCVTGNRTPADYDMEDGDEVSFFPDGT 106
>07_03_0988 + 23160028-23160360
Length = 110
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 256 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 357
F FDG + + TP LEM +GDT++ + GG
Sbjct: 64 FLFDGIRLKGDMTPMGLEMVDGDTVDFFPVMIGG 97
>02_02_0734 +
13500808-13500932,13501194-13501273,13501499-13501537,
13502195-13502532
Length = 193
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 655 VLPFVDVSTKHITMEIVEV-TYSIWYTYNLPYHKLFETH 542
+LPF+ T+H+TME+V + +Y T PY K F +
Sbjct: 37 MLPFIKHCTRHLTMEVVSLFSYRRGETMVHPYDKEFSMY 75
>08_02_0725 -
20442988-20443180,20443268-20443540,20443642-20443853,
20443935-20444247,20444334-20444441,20444537-20444643,
20444743-20444781
Length = 414
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 173 FKIKKHTPLRKLMNAYCDRAGLSMQVVHS 259
++I H P+R L +A C+ AG + V HS
Sbjct: 373 YRISDHRPVRALFDAVCELAGGGVGVEHS 401
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 244 AGSAFRFDGQPINENDTPTSLEMEEGDTIEV 336
A F FDG ++ TP L +E+ D +EV
Sbjct: 210 ADLTFAFDGDKVDAESTPEDLGLEDEDMVEV 240
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -2
Query: 297 WSVILIYWLPIKSECTTCIDRPALSQ*AFINFLRGVCFFIL 175
W V L+ WLP S T +L AFI F GVC I+
Sbjct: 520 WGVPLVPWLPSLSIATNLFLMGSLGAQAFIRF--GVCTAIM 558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,051,915
Number of Sequences: 37544
Number of extensions: 302627
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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