Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0064
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    53   2e-07
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    53   2e-07
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    53   2e-07
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   7.4  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   7.4  
AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical...    27   9.8  

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/34 (64%), Positives = 28/34 (82%)
 Frame = +1

Query: 256 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 357
           F FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 57  FLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +2

Query: 98  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 244
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAV 52


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/34 (64%), Positives = 28/34 (82%)
 Frame = +1

Query: 256 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 357
           F FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 57  FLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +2

Query: 98  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 244
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAV 52


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/34 (64%), Positives = 28/34 (82%)
 Frame = +1

Query: 256 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 357
           F FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 57  FLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +2

Query: 98  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 244
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAV 52


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 583 YTYNLPYHKLFETHNALRSSAMLLCSQNYFLTLLQIQMMFL 461
           + +NLPY   F T       AM LC++ ++L  + +Q+MF+
Sbjct: 184 WLFNLPYSAFFVT-------AMYLCTKFFYLANVCLQLMFM 217


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 583 YTYNLPYHKLFETHNALRSSAMLLCSQNYFLTLLQIQMMFL 461
           + +NLPY   F T       AM LC++ ++L  + +Q+MF+
Sbjct: 184 WLFNLPYSAFFVT-------AMYLCTKFFYLANVCLQLMFM 217


>AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical
           protein Y41D4B.24 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 601 VTYSIWYTYNLPYHKLFETHNALRSSAMLLCSQNY 497
           +  +IWYTY +P   L  +H A+ SS+ L+ + ++
Sbjct: 106 ILVNIWYTYMIPI--LTVSHIAMTSSSFLIVAASF 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,603
Number of Sequences: 27780
Number of extensions: 301499
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)