Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0062
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    28   0.96 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   2.9  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   3.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   9.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.0  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 348 KRTVFFFFYYCFDEISIGTRFCDDRFYELMFNEFII 241
           KR   FF    FD++ +G +   D F   +FN F++
Sbjct: 433 KRNGVFFDLKYFDQVVVGLKEVKDAFSFFIFNRFVL 468


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 241  PHIKNKFKGDCERFVSFFYEIS 176
            P ++ KF+G  E  V+FFY ++
Sbjct: 1212 PELRKKFEGQPEHVVNFFYYVA 1233


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 493 RKQWNNYDIKIYQNVFHLTLPATL-ISNSN 407
           RK+W N + K ++N  HL   ++  +SNS+
Sbjct: 223 RKEWTNREEKYFENQLHLVKASSSDVSNSS 252


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 291 RFCDDRFYELMFNEFIIPISKISLRAIVNVL 199
           R  D + Y+++   F+  + +ISL +IVN+L
Sbjct: 40  RMQDRKGYDVLIKVFVNKLPEISLSSIVNLL 70


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 182  FVKKTNKTFTIALKLIFDMGIINS 253
            F+ +T+KT  +ALK  FDM   N+
Sbjct: 1070 FMSETSKTLNMALKSEFDMTDFNN 1093


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 375 SQLLKSCHCKRTVFFFFYYC 316
           S+ + +   K+++FFF YYC
Sbjct: 61  SRNISNTFFKKSIFFFVYYC 80


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 423 SFQIQIDTSQRYIVSYSQLLKSCH 352
           SF+IQ D   RY   Y  LLKS H
Sbjct: 865 SFEIQPDVLDRYGNEYDILLKSEH 888


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 52   IKEIKHMSDSIISNSCYAQITMVPFVLLFNLVI 150
            IK +KHM    + +    +   +PF+L FN +I
Sbjct: 1381 IKHLKHMKKESVYSKKLEEEYWLPFLLSFNEII 1413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,610
Number of Sequences: 5004
Number of extensions: 50327
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)