Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0061
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    62   8e-11
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    54   2e-08
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    28   1.2  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    28   1.6  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   8.7  

>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
 Frame = +3

Query: 483 KRN--KILPGPHWTTREFQELINFDPEQQIVYLELGCGVGNMIFPLVEEGFTNFFFYAW* 656
           KRN  +     HW  REF        +  +  LE+GCGVGN+++PL+E    N   Y   
Sbjct: 28  KRNETRFFKDRHWLDREFDCYFGLPDKLPLTILEVGCGVGNLVYPLLEVQ-PNLKIYCCD 86

Query: 657 FSPRAVEFVQRNSLYDQ 707
           FSPRA++FV+++S Y++
Sbjct: 87  FSPRAIDFVKKHSCYNE 103



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = +1

Query: 436 RLEKDAKRHWDLFYKRNETKFFRDRIGLHVSF 531
           + +K++K+ WD FYKRNET+FF+DR  L   F
Sbjct: 14  KYKKESKKSWDKFYKRNETRFFKDRHWLDREF 45


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
 Frame = +3

Query: 480 KKRNKILPGPHWTTREFQELINFDPEQ--QIVYLELGCGVGNMIFPLVEEG-FTNFFFYA 650
           K   K      W  +EF EL++   E   +   LE+GCG GN I+P+++E   +N   +A
Sbjct: 89  KNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEIGCGAGNTIWPILKENKNSNLKIFA 148

Query: 651 W*FSPRAVEFVQRNSLYDQK 710
             +S +A++ V++N LYD K
Sbjct: 149 VDYSEKAIDVVKQNPLYDAK 168



 Score = 32.3 bits (70), Expect = 0.076
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 400 QNTRLVPEAKATRLEKDAKRHWDLFYKRNETKFFRDR 510
           +  +L P  +        +R+WD FY +NE KFF +R
Sbjct: 62  EEQKLYPVTEKDAYMTHPERYWDQFYGKNEGKFFMNR 98


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +3

Query: 546 FDPEQQIVYLELGCGVGNMIFPLVEEGFTNFFFYA 650
           +   ++  ++++GCG G +++ L+ EG+  + F A
Sbjct: 271 YSSNKEFSFVDVGCGNGLLVYLLLMEGYNGYGFDA 305


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 277 IKNRIKMETDIPAHVEETSSSDTFVHRLKELS 372
           +K+R   +TDI + +E T +S   VH+ +E+S
Sbjct: 108 LKSRWDSQTDILSQIESTKASLAEVHKAEEIS 139


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 525 EFQELINFDPEQQIVYLELGCGVGNMIFPLVEEGFTNFFFYAW*FSPRAVEFVQRNSL 698
           E   ++NF   +  +  +L  G+G   F  V+ G +  F   W  +P +VE ++R +L
Sbjct: 234 EKARVLNFSYIKDEIIADLYAGIGYFTFSYVKAGASTVF--CWEINPWSVEALRRAAL 289


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 101  LWVLTCIVYGFWV*FFFFQLY 163
            LW L+C+ + FW   +   LY
Sbjct: 1223 LWALSCLTFWFWTGVYSQSLY 1243


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 418 VQDVYFDFVRALFLLVTVLSACERMCHCC 332
           V+ +  +F RA F L++  +ACER+C  C
Sbjct: 330 VKGLQSEFQRA-FRLMSENNACERLCKIC 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,015
Number of Sequences: 5004
Number of extensions: 55892
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)