Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0061
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236... 48 1e-05
05_01_0146 - 953957-956278,956468-956786,957185-957213 36 0.045
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082... 30 1.7
12_02_0238 - 16099652-16099741,16099814-16100257 30 2.2
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 29 3.9
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562... 29 5.2
01_01_0719 - 5590272-5590485,5590849-5590910,5590990-5591202,559... 29 5.2
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 28 9.1
>03_01_0302 -
2361948-2362649,2363422-2363617,2363873-2363997,
2364118-2364180,2364445-2364495,2364597-2364668,
2364779-2364886,2365031-2365135,2365505-2365555,
2365971-2365995,2366234-2366258,2366352-2366439
Length = 536
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +3
Query: 570 YLELGCGVGNMIFPLVEEGFTNFFFYAW*FSPRAVEFVQRNSLY 701
Y E+GCG GN IFPL+ + + F +A FSPRAV+ V+++ Y
Sbjct: 61 YFEVGCGAGNTIFPLIST-YPDIFVHACDFSPRAVDLVKKHKDY 103
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 253 ANLDKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQ 396
AN D KN K+E ++ + EE S +T + RL + S+EEI LQ
Sbjct: 557 ANYDITCLRKNVDKLEAEVNKYREECESKETDIVRLNKQSEEEISALQ 604
>05_07_0008 -
27007919-27007944,27008070-27008127,27008218-27008292,
27008417-27008470,27008574-27008840,27008913-27009193,
27009268-27009409,27009491-27009601,27009975-27010013,
27010173-27010310,27010415-27010552,27011438-27011562,
27011702-27011723
Length = 491
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 516 TTREFQELINFDPEQQIVYLELGCGVGNMIFPLVE 620
TT+EF + ++ P Q++ L++GCG+G F + E
Sbjct: 240 TTKEFVDKLDLKPGQKV--LDVGCGIGGGDFYMAE 272
>12_02_0238 - 16099652-16099741,16099814-16100257
Length = 177
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 367 LSQEEIKLLQNQNTRLVPEAKATRLE----KDAKRHWDLFYKRNETKFFR 504
+ Q+ + N LV A+AT E D HWDL Y + +FFR
Sbjct: 1 MKQKSFMARRRGNPELVTPARATPCETKPLSDLNDHWDLRYLQPALRFFR 50
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 319 VEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRLEKDAKRHWDLFYKRNETKF 498
VEE + + V +K + + E+ +Q + R VPE ++ K +RH +R
Sbjct: 334 VEEIAEVEGAVSDIKGVDEIELSEVQRRKYRKVPEEDDAKMTKRLQRH---LKERRTRHL 390
Query: 499 FRDRIGL 519
++ IGL
Sbjct: 391 HKENIGL 397
>01_05_0714 +
24555494-24555637,24555884-24556071,24556195-24556280,
24556359-24556461,24556798-24557000,24557077-24557681,
24557784-24557918,24558040-24558067,24559517-24559596,
24559873-24559975,24560553-24560635,24560915-24561017,
24561596-24561720,24562001-24562103,24562647-24562726,
24563322-24563429,24563521-24563565
Length = 773
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 286 RIKMETDIPAHVEETSSSDTFVHRLKELSQEEI-KLLQNQNTRLVPEAKATRLEKDAKR 459
R K ETD P H ET DT E+ + I KL +++ L P + K+ K+
Sbjct: 553 RGKRETDNPIHTSETPPMDTNPQNQSEIHRGSIEKLAVDKSNALSPSKGKEQRGKNKKQ 611
>01_01_0719 -
5590272-5590485,5590849-5590910,5590990-5591202,
5591223-5591295,5591664-5591863,5592484-5592633
Length = 303
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 715 CGFWSYKLLRWTNSTAR 665
CG W+Y LLR+T+ T R
Sbjct: 271 CGAWAYNLLRFTDKTLR 287
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +1
Query: 403 NTRLVPEAKATRLE----KDAKRHWDLFYKRNETKFFR 504
N LV A+AT E D HWDL Y + +FFR
Sbjct: 12 NPELVAPARATPRETKPLSDLDDHWDLRYLQPSLEFFR 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,602
Number of Sequences: 37544
Number of extensions: 322948
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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