Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0061
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical...    47   2e-05
Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81140-2|CAB03486.1|  581|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    28   8.1  
X70835-1|CAA50183.1|  581|Caenorhabditis elegans Cytoplasmic int...    28   8.1  

>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +3

Query: 480 KKRNKILPGPHWTTREFQELI-NFDPEQQIVYLELGCGVGNMIFPLVEEGFTNFFFYAW* 656
           + +N      +W+  + + +  + D E++I YLE GCGVGNM+FPLV E   N   +A+ 
Sbjct: 52  RNKNNFFKDRNWSAEDLKMMCPDIDFEKEISYLEAGCGVGNMLFPLVAE-IPNLKLFAFD 110

Query: 657 FSPRAVEFVQRNS 695
           FS  AV+ ++  +
Sbjct: 111 FSDNAVKLLEERA 123



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 34/50 (68%)
 Frame = +1

Query: 361 KELSQEEIKLLQNQNTRLVPEAKATRLEKDAKRHWDLFYKRNETKFFRDR 510
           +EL++++ + L  Q +  + + K  +LE DA+++WD FY RN+  FF+DR
Sbjct: 14  RELTEDDHEKLAKQTS--ISDFKRNKLEIDARKNWDKFYHRNKNNFFKDR 61


>AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical
           protein Y53F4B.42 protein.
          Length = 311

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
 Frame = +3

Query: 489 NKILPGPHWTTREFQELINFDPE-----QQIVYLELGCGVGNMIFPL--VEEGFTNFFFY 647
           N+     +W  +EF EL N + E     ++I  LE+GCGVGN  FPL  V    +    +
Sbjct: 90  NRFFKDRNWLLKEFPEL-NVEDESNLQKEKIEILEVGCGVGNTTFPLLQVNNSSSRLMLH 148

Query: 648 AW*FSPRAVEFVQRNSLYDQKPHEGFLVLDLT 743
           +  ++P A+  ++    YD +    F V D+T
Sbjct: 149 SCDYAPNAIRVLKSQDAYDPEKMNAF-VWDIT 179



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +1

Query: 364 ELSQEEIKLLQNQNTRLVPEAKATRLEKDAKRHWDLFYKRNETKFFRDR 510
           E  +E  +++Q Q +  V E KA RL       WD FY  NE +FF+DR
Sbjct: 48  EQQEEAQRIVQGQKSMKVDEEKAMRLLSTPADQWDAFYAHNENRFFKDR 96


>Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical
           protein Y48E1C.2 protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 552 PEQQIVYLELGCGVGNMIFPLVEEGFT 632
           P   +  L  GCG+G + + L+E+GFT
Sbjct: 152 PRHNVRILVPGCGLGRLAYDLMEQGFT 178


>Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
 Frame = +1

Query: 256 NLDKVTYIKNRIKMETD-IPAHVEETSSSDTFV--HRLKELSQ--EEIKLLQNQNTRLVP 420
           N +     + +IK +TD +   +   ++ +  +  HR++ LSQ  E++++L+N  +R  P
Sbjct: 118 NTEAARRCREKIKRKTDDLETELTRLTARNEVMNQHRIRLLSQVEEQMRMLENIKSR-NP 176

Query: 421 EAKATRLEKDAKRHWDLFYKRNETK 495
           E +A  +  +AK+  D +  + ETK
Sbjct: 177 ELEA-EIRYEAKKIVDTYTHQVETK 200


>AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
 Frame = +1

Query: 256 NLDKVTYIKNRIKMETD-IPAHVEETSSSDTFV--HRLKELSQ--EEIKLLQNQNTRLVP 420
           N +     + +IK +TD +   +   ++ +  +  HR++ LSQ  E++++L+N  +R  P
Sbjct: 118 NTEAARRCREKIKRKTDDLETELTRLTARNEVMNQHRIRLLSQVEEQMRMLENIKSR-NP 176

Query: 421 EAKATRLEKDAKRHWDLFYKRNETK 495
           E +A  +  +AK+  D +  + ETK
Sbjct: 177 ELEA-EIRYEAKKIVDTYTHQVETK 200


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 242  IKSFKIQSLFLTLIDRLAHDMHYWNHNTTERKKI 141
            IKSF+  S+ L  ++ +A D     H+T E KK+
Sbjct: 1034 IKSFRKFSMPLNRLEEIAQDAELEEHSTDEMKKL 1067


>Z81140-2|CAB03486.1|  581|Caenorhabditis elegans Hypothetical
           protein W10G6.3 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 280 KNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRLEKD 450
           ++R+K++ D+   +    +    + R   L +EE+  L+ +N RL  E +  R+E D
Sbjct: 169 EDRLKID-DLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRIELD 224


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 230 KIQSLFLTLIDRLAHDMHYWNHNTTERKKIKPKTHRLYMLKPIDKIKSIDY 78
           ++ + FL  +D+   D     HN   R+KIK +  R  +   + K  + DY
Sbjct: 257 RLSAEFLASLDQKTIDADRLRHNLNHREKIKEEAERQQLEPEMQKSYNNDY 307


>X70835-1|CAA50183.1|  581|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 280 KNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRLEKD 450
           ++R+K++ D+   +    +    + R   L +EE+  L+ +N RL  E +  R+E D
Sbjct: 169 EDRLKID-DLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRIELD 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,852,755
Number of Sequences: 27780
Number of extensions: 312277
Number of successful extensions: 865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)