Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0061
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 324 FNMRRNIGFHL 292
           FN+RR +G+HL
Sbjct: 207 FNLRRRLGYHL 217


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 203 IDRLAHDMHYWNH 165
           +D L + +H+W+H
Sbjct: 463 VDALCNTLHHWHH 475


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 355 CERMCHCCLF 326
           C  +CHCC F
Sbjct: 743 CFALCHCCDF 752


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 259 DWQLNELKVLK 227
           DWQ+N++ +LK
Sbjct: 252 DWQINDIALLK 262


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 525 EFQELINFDPEQQIVYLELGCGVGNMI 605
           E +EL  F   + +  L  GC +G+MI
Sbjct: 254 EREELEQFAENEDLEELCRGCNLGHMI 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,633
Number of Sequences: 438
Number of extensions: 3478
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)