Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0060
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347... 31 0.95
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961... 30 2.2
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 29 2.9
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 29 2.9
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 29 3.9
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 29 5.1
02_02_0353 + 9276316-9276518,9276915-9277314 29 5.1
07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619 28 6.7
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985... 28 6.7
01_06_0084 + 26286463-26288259 28 6.7
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157... 28 8.9
09_06_0287 + 22047404-22048409,22048754-22049967 28 8.9
09_02_0444 - 9444340-9444829,9444985-9445688 28 8.9
02_02_0164 + 7324490-7324679,7325144-7325237,7325406-7325526 28 8.9
01_01_0656 + 5013609-5014256 28 8.9
01_01_0024 - 185516-185676,186459-186735 28 8.9
>05_06_0286 +
26932395-26933155,26934287-26934407,26934496-26934772,
26934934-26935094
Length = 439
Score = 31.1 bits (67), Expect = 0.95
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 676 ACPSAGPARGSADLHALGACHDPTRSHHAPRARRWYRIPTTSPSLKQRNRSL 521
A AG GS+ + A G+ P R P RW RIP T P R R +
Sbjct: 143 ATAGAGHGAGSSSVAAAGSGEAPARRKRTPG--RWRRIPRTLPHPCLRKRPM 192
>09_04_0245 +
15995689-15995742,15995979-15996075,15996165-15996185,
15996442-15996573,15996707-15996834,15996919-15997203,
15997391-15997521,15999700-15999817,16000609-16000703,
16001437-16001511,16001860-16001911,16002767-16002859,
16003625-16003690,16003785-16003867,16003942-16004054,
16005271-16005410,16005569-16005643,16006084-16006160,
16006426-16006514,16008039-16008085,16009004-16009138,
16009298-16009345,16009605-16009667,16009709-16009730,
16010284-16010458,16014250-16014321,16014887-16014958,
16015904-16016005,16016197-16016225,16016333-16016403,
16016549-16016597,16016684-16016784,16017495-16017623,
16017683-16017752,16017975-16018194,16019368-16019389,
16019457-16019604,16021569-16021693,16022344-16022774,
16022984-16023110,16023241-16023292,16023351-16023502
Length = 1461
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 563 NAIPPAGSGSMVRTRRIVASPQRMEVGTAPRWSSGG--ACQRTS 688
+A P A S ++ TRR + Q E+G A RWSS +C+ TS
Sbjct: 520 HAQPAAASDRILLTRREPSMDQLKELGWAKRWSSQPYVSCRTTS 563
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 430 WRSGAPSERRRNYPSPGSTGSRPGNSSHRNSPRK*TSLDKE 308
+ S PS R+RN GST +P N H + T +D++
Sbjct: 477 FESRGPSSRKRNLEEGGSTADKPLNRLHPADSIEGTVIDRD 517
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +3
Query: 102 IEGTRFHTKF---IIYHSQFFGHLYKRC 176
+EGT +HT+F I Y + ++ +LY RC
Sbjct: 542 VEGTHWHTRFTHLINYGAGYYSYLYARC 569
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 6 LCYSIPGFEITCQTSSRIYCVSDISRN*YLRRIEGTR 116
LCYS G I +S+ C+ D+ LRR + TR
Sbjct: 615 LCYSADGTYILAGGNSKYICMYDVGEQVLLRRFQITR 651
>08_02_1620 - 28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -1
Query: 696 STPDVLWHAPPLDQRGAVPTSMRWGLATILRVRTMLPEPAGGIAFXXXXXXXXXAIDH-S 520
S+P + H+P +DQ +P+ ++ G +P P+ +A + + S
Sbjct: 955 SSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLS 1014
Query: 519 ASLPKSGQ---QSPNFKP 475
+SL +GQ Q N P
Sbjct: 1015 SSLTNTGQATHQQTNMAP 1032
>02_02_0353 + 9276316-9276518,9276915-9277314
Length = 200
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 643 ADLH-ALGACHDPTRSHHAPRARRWYRIPTTSP 548
A+LH A G D +RS H R RRW P++SP
Sbjct: 145 AELHQAEGLVDDRSRSRHRRRRRRW--CPSSSP 175
>07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619
Length = 314
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 692 PLMFFGMPLRWTSEGQCRPPCAGGLPRSYAFAPCSQSPQ 576
PL+ FG R T G+C PC RS PC + Q
Sbjct: 12 PLLIFGRRRRQTKSGRCSNPC-----RSLPTDPCERLSQ 45
>05_06_0279 +
26896997-26897457,26898100-26898220,26898310-26898586,
26898735-26898895
Length = 339
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -3
Query: 670 PSAGPARGSADLHALG--ACHDPTRSHHAPRARRWYRIPTTSPSLKQRNRSL 521
PS A S L A AC P R P RW RIP T P R R +
Sbjct: 43 PSQSGANSSTFLPAAAGSACEAPARKKRTPG--RWRRIPRTLPHPCLRKRPM 92
>01_06_0084 + 26286463-26288259
Length = 598
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 484 IGRLLPRLRETCGVIDCVVSSWGSWSECDTTCGLWEHGANA 606
+G L L CG+++C +G E G+W G NA
Sbjct: 264 VGSSLVSLYSKCGLVECAYQVFGEAPE--RNLGIWNAGLNA 302
>12_02_1262 +
27415191-27415279,27415367-27415565,27415635-27415775,
27415939-27416003,27416111-27416489,27416688-27417149,
27417226-27417546,27418184-27418501
Length = 657
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +3
Query: 573 HLRALGAWCERVGSW----QAPSAWRSALPLAGPAEGHAKEHQGCSSDSDVPITRTKQ 734
HLR+L W R SW + P +A +A P++ H +++ S + I + Q
Sbjct: 453 HLRSLPTWHSRTSSWSLCLKVPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQ 510
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 9 CYSIPGFEITCQTSS 53
CY +PGF +TC SS
Sbjct: 49 CYHLPGFNLTCDRSS 63
>09_02_0444 - 9444340-9444829,9444985-9445688
Length = 397
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -3
Query: 685 CSLACPSAGPARGSADL--HALGACHDP-TRSHHAPRARRWYRI 563
C C ++GP G+ ++ H HD T++ H R RRW+ I
Sbjct: 341 CRRPCWASGPVAGAGEVGVHRRARHHDDRTQARHG-RTRRWFGI 383
>02_02_0164 + 7324490-7324679,7325144-7325237,7325406-7325526
Length = 134
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 679 LACPSAGPARGSADLHALGACHDPTRSHHA 590
L+ + P R SADL +GACH + +HA
Sbjct: 13 LSMQNGFPPRKSADLMGIGACHLLSTLNHA 42
>01_01_0656 + 5013609-5014256
Length = 215
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -2
Query: 662 WTSEGQCRP-PCAGGLPRSYAFAPCSQSPQVVSHSDH--EPQLETTQSITP 519
WT G R P GG A APC+ + +H+ H P TT S P
Sbjct: 64 WTRGGALRNVPVGGGTRNKVAPAPCTGRRKRAAHAAHAAAPPPTTTASSAP 114
>01_01_0024 - 185516-185676,186459-186735
Length = 145
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +3
Query: 558 VGMRYHLRALGAWCERVGSWQAPSAWRSALPLAGPAEGHAKEHQG 692
VGMR LR R GSW W G HAKE +G
Sbjct: 42 VGMRSQLRRRWGIGGRCGSWDDEGVWSG----GGGVAQHAKERRG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,129,633
Number of Sequences: 37544
Number of extensions: 483843
Number of successful extensions: 1704
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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