Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0058
         (427 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I2H8 Cluster: Putative uncharacterized protein PFI164...    31   7.5  
UniRef50_A3EXG5 Cluster: Replicase polyprotein 1ab (pp1ab) (ORF1...    31   9.9  

>UniRef50_Q8I2H8 Cluster: Putative uncharacterized protein PFI1645c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI1645c - Plasmodium falciparum
           (isolate 3D7)
          Length = 642

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 217 QVNGILYKLFTYSKFQYLQ*KSIFFLIN 300
           +VN   +KL  Y KFQYLQ ++I +L N
Sbjct: 370 KVNNSSFKLLLYKKFQYLQKENIRYLYN 397


>UniRef50_A3EXG5 Cluster: Replicase polyprotein 1ab (pp1ab) (ORF1ab
            polyprotein) [Includes: Replicase polyprotein 1a (pp1a)
            (ORF1A)] [Contains: Non-structural protein 1 (nsp1)
            (Leader protein); Non-structural protein 2 (nsp2) (p65
            homolog); Non-structural protein 3 (EC 3.4.22.-) (nsp3)
            (Papain- like proteinase) (PL-PRO) (PL2-PRO);
            Non-structural protein 4 (nsp4); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3CLp) (nsp5); Non- structural
            protein 6 (nsp6); Non-structural protein 7 (nsp7); Non-
            structural protein 8 (nsp8); Non-structural protein 9
            (nsp9); Non- structural protein 10 (nsp10) (Growth
            factor-like peptide) (GFL); RNA- directed RNA polymerase
            (EC 2.7.7.48) (RdRp) (Pol) (nsp12); Helicase (Hel)
            (nsp13); Exoribonuclease (EC 3.1.13.-) (ExoN) (nsp14);
            Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU)
            (nsp15); Putative 2'-O-methyl transferase (EC 2.1.1.-)
            (nsp16)]; n=4; Bat coronavirus HKU9|Rep: Replicase
            polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Non-structural protein 1 (nsp1) (Leader protein);
            Non-structural protein 2 (nsp2) (p65 homolog);
            Non-structural protein 3 (EC 3.4.22.-) (nsp3) (Papain-
            like proteinase) (PL-PRO) (PL2-PRO); Non-structural
            protein 4 (nsp4); 3C-like proteinase (EC 3.4.22.-)
            (3CL-PRO) (3CLp) (nsp5); Non- structural protein 6
            (nsp6); Non-structural protein 7 (nsp7); Non- structural
            protein 8 (nsp8); Non-structural protein 9 (nsp9); Non-
            structural protein 10 (nsp10) (Growth factor-like
            peptide) (GFL); RNA- directed RNA polymerase (EC
            2.7.7.48) (RdRp) (Pol) (nsp12); Helicase (Hel) (nsp13);
            Exoribonuclease (EC 3.1.13.-) (ExoN) (nsp14);
            Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU)
            (nsp15); Putative 2'-O-methyl transferase (EC 2.1.1.-)
            (nsp16)] - Bat coronavirus HKU9 (BtCoV) (BtCoV/HKU9)
          Length = 6930

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 198  WVFDCYTGKRNTLQIVYI-F*ISVFT 272
            W+++C+TG  +T+ I Y+ F +SVFT
Sbjct: 3557 WLYNCWTGSADTVAISYLTFMVSVFT 3582


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,771,019
Number of Sequences: 1657284
Number of extensions: 8099126
Number of successful extensions: 16319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16318
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)