Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0058
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   3.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   6.5  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    24   8.6  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 121  ITRVYM*INLICKQASFFIN*IKMSI 44
            I R  + +NL C  ASFF+N ++ S+
Sbjct: 1162 IKRTTLGLNLTCGTASFFLNKLEKSL 1187


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 116 CYYIYILGRWIERIICIR 169
           C Y+Y++ RWI R   ++
Sbjct: 63  CLYLYLIYRWITRSFTVK 80


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 147 SRESFVSAINVANPSFKWVFDCYTGKRNT 233
           SR +  + IN +N    W+ +C   K+NT
Sbjct: 786 SRSAVRNYINFSNCFTYWIINCILEKKNT 814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,350
Number of Sequences: 5004
Number of extensions: 37305
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)