Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0058
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    28   3.2  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    28   3.2  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    27   4.3  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    27   4.3  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    27   4.3  
AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenase...    27   5.6  
AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine re...    27   7.4  
AC090999-19|AAK26156.1|  575|Caenorhabditis elegans Hypothetical...    27   7.4  

>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 106 CIHVLLYLYSRKVDRENHLYPPSMLPTPVLNGYLTVTQVNGILYKLFTYSKFQYLQ*KSI 285
           CI +  YL+  K D   H  P ++L T  +   + V  V G L  + +  +F+ LQ    
Sbjct: 7   CIDIRAYLWQTKHDLTLHPIPIAILAT--IYTIIVVVGVTGNLLVVMSVMRFKVLQSVRN 64

Query: 286 FFLIN 300
            F+++
Sbjct: 65  MFIVS 69


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 106 CIHVLLYLYSRKVDRENHLYPPSMLPTPVLNGYLTVTQVNGILYKLFTYSKFQYLQ*KSI 285
           CI +  YL+  K D   H  P ++L T  +   + V  V G L  + +  +F+ LQ    
Sbjct: 7   CIDIRAYLWQTKHDLTLHPIPIAILAT--IYTIIVVVGVTGNLLVVMSVMRFKVLQSVRN 64

Query: 286 FFLIN 300
            F+++
Sbjct: 65  MFIVS 69


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 139 KVDRENHLYPPSMLPTPVLNGYLTVTQVNG 228
           KV+R++  + P + P PV++GY  +  V+G
Sbjct: 412 KVERKH--WEPKVAPAPVIDGYAPILDVSG 439


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 133 SRKVDRENHLYPPSMLPTPVLNGYLTVTQVNGILYKLFTYSKFQYLQ*KSIFFL-ING*I 309
           S+K  +  HL   +++    +N +L +  VN ++Y ++ + + Q L    +F L  +G +
Sbjct: 224 SKKTIQMQHLLIFALILQASVNTFLFIVPVNAVIYIVYIHHQNQLLNNLIVFCLAFHGIV 283

Query: 310 NT*KKLPXRMPFRN 351
           +T   +    P+R+
Sbjct: 284 STLIMIFAHKPYRD 297


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 118 LLYLYSRKVDRENHLYPP---SMLPTPVLNGYLTVT 216
           L Y +   +DR N L PP   + +PT + NG L  T
Sbjct: 127 LFYRFVLSIDRRNRLAPPAPRATIPTTLSNGQLMPT 162


>AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenases,
           short chain protein16 protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 177 VANPSFKWVFDCYT 218
           VANP+  WV DCY+
Sbjct: 269 VANPNIGWVVDCYS 282


>AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine
           receptor, class x protein110 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 178 LPTPVLNGYLTVTQVNGILYKLFTYSKFQYLQ*KSIFFLI 297
           + T ++ GY+      G+L  LF +  F  L+ K++F+++
Sbjct: 11  ISTRIVGGYMIFAASMGVLINLFMFYHFLSLE-KTVFYIL 49


>AC090999-19|AAK26156.1|  575|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.16a protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 177 VANPSFKWVFDCYTGKRNTLQIVYIF*ISVFTMKIYIFFNKWL 305
           +A+P+  ++  C    +N  +I +   ++ F +K   FF++WL
Sbjct: 253 IASPALLFLSYCQKSAKNRKKIDFANFLADFLLKNRFFFSRWL 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,832,701
Number of Sequences: 27780
Number of extensions: 202813
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)