Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0058
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   0.82 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   1.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 400 VSLGNRSHPPVAILTSGS*TACVXVVFFTYLFNHLLK 290
           +S G  ++PP+A +  G+  + V  +   Y+F   L+
Sbjct: 323 ISAGADAYPPLAAIVLGAIGSIVFYIISRYVFRSALE 359


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 141 GGSRESFVSAINVANPSFKWVFDCYTGKRNTLQIVY 248
           GG+++    A+ +   +F W  +C T K   + +VY
Sbjct: 50  GGNKK--YRALRLDTGNFSWGSECTTRKTRIIDVVY 83


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 160 LYPPSMLPTPVLNGYLTVTQV 222
           + PP+ L  P+L  YL  T V
Sbjct: 288 IIPPTSLTVPLLGKYLLFTMV 308


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 413 VNVLCVPGESQPSSCSHPDLWFLNG 339
           +N  C   E  PS CS   + + NG
Sbjct: 351 LNTKCNTLERTPSKCSQTSVHYSNG 375


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 160 LYPPSMLPTPVLNGYLTVTQV 222
           + PP+ L  P+L  YL  T +
Sbjct: 301 IIPPTSLAIPLLGKYLLFTMI 321


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 100 FTCIHVLLYLYSRKVDRENHLYPPSML 180
           FTCI ++  L  R      H Y PS L
Sbjct: 200 FTCIQIVFNLRRRLGYHLFHTYIPSAL 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,983
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)