Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0057
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   2.3  
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    26   5.3  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   7.0  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.2  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   9.2  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    25   9.2  

>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 191 CHSGLETLWKGMHSKTGRYMAEKISLKALWITQ 93
           CHS +   W G HS T   +AEK +LK   I Q
Sbjct: 369 CHSNV---WSGEHSLTLSNLAEKSNLKEAEIIQ 398


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 143 QFW----NAFPSTVFPIRYDMSFFKRGPR 217
           +FW    N  P++  PI+ D SFF+ G R
Sbjct: 73  EFWGIHNNINPASSLPIKSDYSFFREGVR 101


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 176 ETLWKGMHSKTGRYMAEKI 120
           E + KG+ + TG YMAEK+
Sbjct: 183 ENVVKGVRTTTGAYMAEKL 201


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 162 LPQCFQSAMTCLSSNEAHEEYSAVKSG 242
           L QCF+S ++ L   + HE  S+ + G
Sbjct: 131 LLQCFRSNVSSLRGQKVHEHCSSTEKG 157


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 55  VSRIELLHII*NHCVIHSAFSEIFSAMYRPVLECIPFH 168
           ++RI+ LH + N   IHS  S +FS   + +  C P +
Sbjct: 294 LTRIKNLHPLTNKSTIHSLLSYVFSRQTQNI-ACEPMY 330


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 143 QFWNAFPSTVFPIRYDMSFFKRGPRRVLSGKKR 241
           QFWNA  +T FP +  M+  +     +L+ KKR
Sbjct: 403 QFWNALLNTTFPDKKAMAPLQNA---LLNSKKR 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,994
Number of Sequences: 5004
Number of extensions: 46957
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)