Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0057
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454...    30   1.8  
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124...    29   4.1  
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    27   9.5  

>11_06_0498 -
           24344454-24344660,24344840-24344944,24345324-24345407,
           24345523-24345615,24345795-24345920,24347157-24347315,
           24347398-24347475,24348316-24348375,24349433-24349555,
           24349961-24350041
          Length = 371

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -3

Query: 164 KGMHSKTGRYMAEKISLKALWITQWF*IIWRSSILETGGAMFKR 33
           K ++ +  R++AE + L+ +W+  W+  + RS  L +  A+ K+
Sbjct: 39  KSLYRRINRFLAELLWLQLVWLVDWWAGVKRSGCLGSTLAVMKK 82


>03_06_0744 +
           35910512-35910569,35911145-35911325,35912332-35912419,
           35912541-35912726,35913591-35913725,35913803-35913862,
           35914609-35914698,35915384-35915515,35916039-35916183,
           35916266-35916439,35916629-35916692,35916778-35916847,
           35917328-35917445,35918258-35918280,35918398-35918499,
           35919831-35920250,35920327-35920563
          Length = 760

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 199 ERHVIADWKHCGRECIPKLDGTWQKRSH*KH 107
           E H I+ WK   R+   + +G+W+   H  H
Sbjct: 280 ETHTISAWKEAKRQTYARNEGSWRANHHLVH 310


>03_05_0440 + 24322332-24322388,24323478-24323615,24323654-24323736,
            24325038-24325128,24326091-24326189,24326356-24326418,
            24327182-24327259,24329354-24329543,24329812-24330065,
            24330159-24330531,24331193-24331276,24332085-24332371,
            24332495-24332542,24333194-24333220,24333951-24333987,
            24334063-24334250,24334343-24334521,24334595-24334877,
            24335481-24335717,24335798-24335988,24336552-24336561,
            24336844-24336984,24337073-24337288,24338437-24338727,
            24338852-24339025
          Length = 1272

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 247  SAPALLTSINDSRLPVRAIKVKKDLWDKKSIVGGIVLAMQTTSLL 381
            S P  L+ I +    +RA+       DKK+ + G+VL     +LL
Sbjct: 959  SQPCTLSQIQEREADIRALAELSRALDKKASLKGLVLMFSVEALL 1003


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,672,112
Number of Sequences: 37544
Number of extensions: 295963
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)