Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0057
         (640 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001551-1|AAN71306.1|  360|Drosophila melanogaster RE11603p pro...    33   0.43 
AY051786-1|AAK93210.1|  349|Drosophila melanogaster LD30520p pro...    31   1.7  
AE014297-1883|AAF55085.1|  349|Drosophila melanogaster CG3508-PA...    31   1.7  
AE014297-1882|AAN13614.1|  360|Drosophila melanogaster CG3508-PB...    31   1.7  

>BT001551-1|AAN71306.1|  360|Drosophila melanogaster RE11603p
           protein.
          Length = 360

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -2

Query: 255 RGRXRRFLPLSTLRG-PRLKKDMS*RIGNTVEGNAFQN---WTVHGRKDLTESTVDNAVV 88
           RG+  +  P  T    P+ K DMS   G T+EGN  QN     V  R  L     D  ++
Sbjct: 56  RGKKSKMQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTDRFLM 115

Query: 87  LDNMEELYSGD 55
            ++M EL+  D
Sbjct: 116 EEHMSELHKDD 126


>AY051786-1|AAK93210.1|  349|Drosophila melanogaster LD30520p
           protein.
          Length = 349

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -2

Query: 255 RGRXRRFLPLSTLRG-PRLKKDMS*RIGNTVEGNAFQN---WTVHGRKDLTESTVDNAVV 88
           RG+  +  P  T    P+ K DMS   G T+EGN  QN     V  R  L     +  ++
Sbjct: 45  RGKKSKMQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTNRFLM 104

Query: 87  LDNMEELYSGD 55
            ++M EL+  D
Sbjct: 105 EEHMSELHKDD 115


>AE014297-1883|AAF55085.1|  349|Drosophila melanogaster CG3508-PA,
           isoform A protein.
          Length = 349

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -2

Query: 255 RGRXRRFLPLSTLRG-PRLKKDMS*RIGNTVEGNAFQN---WTVHGRKDLTESTVDNAVV 88
           RG+  +  P  T    P+ K DMS   G T+EGN  QN     V  R  L     +  ++
Sbjct: 45  RGKKSKMQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTNRFLM 104

Query: 87  LDNMEELYSGD 55
            ++M EL+  D
Sbjct: 105 EEHMSELHKDD 115


>AE014297-1882|AAN13614.1|  360|Drosophila melanogaster CG3508-PB,
           isoform B protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -2

Query: 255 RGRXRRFLPLSTLRG-PRLKKDMS*RIGNTVEGNAFQN---WTVHGRKDLTESTVDNAVV 88
           RG+  +  P  T    P+ K DMS   G T+EGN  QN     V  R  L     +  ++
Sbjct: 56  RGKKSKMQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTNRFLM 115

Query: 87  LDNMEELYSGD 55
            ++M EL+  D
Sbjct: 116 EEHMSELHKDD 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,754,372
Number of Sequences: 53049
Number of extensions: 483519
Number of successful extensions: 937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)