Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0057
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81477-6|CAB03930.1|  176|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    28   6.5  
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormo...    27   8.6  
AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormo...    27   8.6  

>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 342 WWNSLGYADYVPFADTGGKQLNL*KPHTIFKISFKYLHIFH 464
           W N++G  D+    ++G   L L  P  +F ++   L  FH
Sbjct: 766 WLNAIGLVDFRAIGESGALFLQLLAPIALFVVTMLQLKFFH 806


>Z81477-6|CAB03930.1|  176|Caenorhabditis elegans Hypothetical
           protein C27C7.8 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 210 AHEEYSAVKSGVXCPGIAHIHKR 278
           AH+  SA+++ + CPG++ +H++
Sbjct: 9   AHQSGSAMEACINCPGVSKLHQK 31


>Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical
           protein C51E3.8 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 330 KIYCWWNSLGYADYVPFADTG-GKQLNL*KPHTIFKISFKYLHIFHSS 470
           K+ CW+    + D  PFA+ G G        + +FKI+ +Y   F +S
Sbjct: 64  KLECWFTREMFEDLFPFANLGWGPSSCWPYSYDVFKIASRYFPEFGTS 111


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 210 AHEEYSAVKSGVXCPGIAHIHKR 278
           AH+  SA+++ + CPG++ +H++
Sbjct: 193 AHQSGSAMEACINCPGVSKLHQK 215


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 210 AHEEYSAVKSGVXCPGIAHIHKR 278
           AH+  SA+++ + CPG++ +H++
Sbjct: 174 AHQSGSAMEACINCPGVSKLHQK 196


>Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical
           protein F56D5.10 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/75 (34%), Positives = 34/75 (45%)
 Frame = -3

Query: 500 FLIRLSL*YSRRMKDMQIFKTYFKNSMWFSEI*LFSPCIGKRDVVCIAKTIPPTIDFLSH 321
           +L  L L +      M IF +  K+S WFS+  +   C G    V I  TI   I + S+
Sbjct: 63  YLAPLFLDWIMTFHRMSIFISPIKSSKWFSDTKVVVYCTG----VTILITIWLLIPYFSN 118

Query: 320 KSFFTFIALTGKRES 276
            S   F ALT   ES
Sbjct: 119 CS-LNFNALTSYHES 132


>AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 75 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 210 AHEEYSAVKSGVXCPGIAHIHK 275
           AHE  SA+++ + CPG+ H+ +
Sbjct: 178 AHEHGSAMEACIDCPGVDHLEQ 199


>AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 72 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 210 AHEEYSAVKSGVXCPGIAHIHK 275
           AHE  SA+++ + CPG+ H+ +
Sbjct: 155 AHEHGSAMEACIDCPGVDHLEQ 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,276
Number of Sequences: 27780
Number of extensions: 255869
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)