Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0057
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02240.1 68415.m00162 F-box family protein / SKP1 interacting...    30   1.5  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    29   2.0  
At1g65150.2 68414.m07387 meprin and TRAF homology domain-contain...    29   3.4  
At1g65150.1 68414.m07386 meprin and TRAF homology domain-contain...    29   3.4  
At3g57650.1 68416.m06423 acyl-CoA:1-acylglycerol-3-phosphate acy...    28   4.5  

>At2g02240.1 68415.m00162 F-box family protein / SKP1 interacting
           partner 3-related 
          Length = 320

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 195 LSSNEAHEEYSAVKSGVXCPGIAHIHKRFSFACKGNKSKKRFM 323
           LS    +  Y   K+   CPG+ H+         G +S KRF+
Sbjct: 205 LSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRFI 247


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1123

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 209 LV*RKTCHSGLETLWKGMHSKTG 141
           LV  + C S LE LW G+HS TG
Sbjct: 607 LVKLQMCESKLEKLWDGVHSLTG 629


>At1g65150.2 68414.m07387 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 296

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 371 VVCIAKTIPPTIDFLSHKSFFTFIALTGKRESFMDV 264
           V C++ T PP ID  ++ +FF F     K  SF DV
Sbjct: 68  VECLSSTTPP-IDVFAYLTFFVFSEEEKKYLSFQDV 102


>At1g65150.1 68414.m07386 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 296

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 371 VVCIAKTIPPTIDFLSHKSFFTFIALTGKRESFMDV 264
           V C++ T PP ID  ++ +FF F     K  SF DV
Sbjct: 68  VECLSSTTPP-IDVFAYLTFFVFSEEEKKYLSFQDV 102


>At3g57650.1 68416.m06423 acyl-CoA:1-acylglycerol-3-phosphate
           acyltransferase, putative similar to
           acyl-CoA:1-acylglycerol-3-phosphate acyltransferase
           GI:4583544 from [Brassica napus]
          Length = 389

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 191 CHSGLETLWKGMHSKTGRYMAEKISLKALWITQWF 87
           C+  +  L K  + K  R +AE + L+ +WI  W+
Sbjct: 29  CYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWW 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,690,000
Number of Sequences: 28952
Number of extensions: 243791
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)