Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0056
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342...    29   2.4  
10_01_0127 - 1519803-1520036,1520802-1521095,1521840-1522614,152...    28   4.3  

>01_01_0462 +
           3422352-3422439,3423057-3423241,3423333-3423530,
           3423617-3423676,3424022-3424171
          Length = 226

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +2

Query: 125 VLGFIFVTEFLDSVAALKARDKSYAIAYKP-----KKTN--STDKKVCRYTAXYPT*XIF 283
           +  F FV     SVA  ++RD    +A+K      KKT   S + K+C+    Y T  +F
Sbjct: 4   IRSFAFVLVLAFSVAVAESRDSFNVLAHKSFPLENKKTGLTSANGKLCQLCEQYSTEALF 63

Query: 284 NARQN 298
             +QN
Sbjct: 64  YLQQN 68


>10_01_0127 -
           1519803-1520036,1520802-1521095,1521840-1522614,
           1524574-1525412
          Length = 713

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 284 NARQNFL*VFFVIGHNILSVSKFCGFSKGVRGLITKL 394
           +++QNF+ VF  IG+   S +K CG  K  RG+   L
Sbjct: 517 SSQQNFITVFNDIGNITCSRNKTCGLIKCDRGIYKSL 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,946
Number of Sequences: 37544
Number of extensions: 214933
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)