Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0055
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    30   0.29 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 457 LLKFHYIFTSITKLKQQINDGPRTKKPISTAFALFVNS 570
           L+ F  IF SIT L+      P + K I TA  LF N+
Sbjct: 484 LIAFSEIFASITGLEFAFTKAPPSMKSIITALFLFTNA 521


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +1

Query: 478  FTSITKLKQQINDGPRTKKPISTAFALFVNSKCP 579
            FTS+  +K+ +N GP ++K  S+ F+++V++  P
Sbjct: 2591 FTSLLDIKKWLNLGP-SEKLFSSLFSIYVDNDIP 2623


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 469 HYIFTSITKLKQQINDGPRTKKPIS 543
           H+  T +TKL+ Q   G  +KKP+S
Sbjct: 300 HFKLTPLTKLEPQPPSGSPSKKPVS 324


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 5   YFSTHGV-FR*YFYFPVQYPSRIASAVL 85
           Y  + G+ FR   YFPV YP+ I S  L
Sbjct: 28  YRPSEGIWFRVRTYFPVSYPADIKSEAL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,765
Number of Sequences: 5004
Number of extensions: 47509
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)