Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0055
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    29   3.6  
02_05_1360 + 35942493-35942682,35942799-35942858,35943099-359432...    28   6.3  
01_01_0433 + 3282195-3285185                                           27   8.4  

>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 178 FLVAYFIAEGRVPESPSWLFVPSASIPSVLGX*LLGXXYYLSILFG 315
           FLVA F+A G  P    +L+  S S   V    LLG  Y L ++ G
Sbjct: 137 FLVAAFLAAGGFPREALFLWAASTSASRV----LLGRHYVLDVVAG 178


>02_05_1360 +
           35942493-35942682,35942799-35942858,35943099-35943217,
           35945405-35945449,35945598-35945676,35945777-35945838,
           35945932-35946037,35946193-35946253,35947097-35947167,
           35947459-35947598,35947887-35947994
          Length = 346

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 205 GRVPESPSWLFVPSASIPSVLG 270
           GRV   PSWL VP  ++ +VLG
Sbjct: 285 GRVVGRPSWLPVPEIALKAVLG 306


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 202 EGRVPESPSWLFVPSAS 252
           EGR+PESP +L +P++S
Sbjct: 917 EGRIPESPHFLTLPNSS 933


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,301
Number of Sequences: 37544
Number of extensions: 258089
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)