Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0053
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    28   1.2  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   1.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   2.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   4.9  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   6.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   6.5  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -2

Query: 481 LFIGASVLVPPRGRV---QEGRVXXL*GVRGS----TGIGRNRSVEVRAGVAKAVYRGMG 323
           L+  A  +VP RG+V    +  +    G  G     +G+    S++  AGV  A YRG  
Sbjct: 27  LYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRGHV 86

Query: 322 RXIVMEGDEVVGXIRXG 272
           R ++    +V   I+ G
Sbjct: 87  RVLLFNYSDVDFPIKVG 103


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -3

Query: 123 RAKARGSPKESRWR----GFAPERGRPPETASMGCSASSDRIRRL 1
           R+++R   ++SRW+    GFAP      E  + G  A++   RR+
Sbjct: 55  RSRSRSPARDSRWKSSSSGFAPAHPPIEEPTNNGAEAAAAAARRI 99



 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 440 STPRRYQNGSTDKQEENKRPVQKWYPPGTLPKCPPSMAMRITIAVNGQLEAYVK 601
           ++PR +        E N +P +KW          PS    +  A+ G   AYVK
Sbjct: 266 NSPRNFSTHGNGNGE-NGQPRRKWLEEKVYINLTPSRGFHLRQAIVGPQGAYVK 318


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 132 RISPEGNISNCEDKSKIAH 188
           R SP+G +S+C+D S + H
Sbjct: 170 RTSPQGTVSSCDDFSYLVH 188


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 485 ENKRPVQKWYPPGTLPKCPP 544
           ENK PV +  PP  LP  PP
Sbjct: 439 ENKPPVAQQSPPVLLPTLPP 458


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 446 PRRYQNGSTDKQEENKRPVQKWYPPG 523
           PR + +      +    P+++WYPPG
Sbjct: 189 PRVFVDSQLPVPKAAPSPIEEWYPPG 214


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 434 LHSTPRRYQNGSTDKQEENKRPVQK 508
           L +TPR       DK EENKRP+ +
Sbjct: 104 LSNTPRDKDAVIHDKIEENKRPISQ 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,187
Number of Sequences: 5004
Number of extensions: 43785
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)