Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0053
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0615 + 5072267-5073253 31 0.54
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 30 1.6
08_02_1077 - 24160545-24161936 29 2.2
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 29 2.9
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514... 28 5.0
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 6.6
07_01_1085 + 9890369-9892114,9892213-9892731 28 6.6
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371 28 6.6
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 28 6.6
04_01_0373 - 4913283-4913669 27 8.7
01_06_0602 + 30526867-30527358 27 8.7
>12_01_0615 + 5072267-5073253
Length = 328
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 360 RTSTDRFLPIPVLPRTPHKXXTRPSCTRPRGGTKTEAPINRK----RTKGQSRSGTLQER 527
R S+ R + PR P + R CTR RGG + + + ++ G+ R + + R
Sbjct: 119 RRSSRRLTTTMLAPR-PRRWTWRRCCTRMRGGGRRDGELGQRGAAAEAAGKERRRSARRR 177
Query: 528 CQSVRRQWQCG 560
+ RQW+ G
Sbjct: 178 ARPA-RQWRAG 187
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 468 APINRKRTKGQSRSGTLQERCQSVRRQWQCGLQSR*TVSSKLT 596
+P + R+ +S +GTL SV RQW L ++ T SSKL+
Sbjct: 432 SPSSTLRSANRSTAGTLVVCPASVLRQWASELAAKVTESSKLS 474
>08_02_1077 - 24160545-24161936
Length = 463
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 556 HCH*RRTLWQRSWRVPLLDWPFVLFLFIGASVLVPPRG---RVQEG 428
HC TL + VPLL WP FI A ++V RG RV EG
Sbjct: 350 HCGWNSTLEGVAAGVPLLAWPMKADQFIDARLVVDLRGAAVRVAEG 395
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 561 IRIAIDGGHFGNVPGGYHFWTGLLFSSCLSVLPFWYRRGV-EC 436
+RIAI + PG Y FW G + + + W +R + EC
Sbjct: 686 VRIAIADLKYEGQPGHYVFWKGFIEAKSFILRLVWMQRSIAEC 728
>12_01_0624 -
5137096-5137310,5137923-5138380,5138428-5140070,
5140245-5140462,5140589-5140757,5141249-5141305
Length = 919
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 75 QTLSSETPLANPSPLLSGCRISPEGNIS---NCEDKSKIAHQQTYRQYKEALRQQRQQDI 245
+TL P L+ C + GNIS +C D KI+H Q Y +R +R+ +
Sbjct: 769 KTLPGYLQDVKPKSLVLDCSLPLLGNISMGASCSDWDKISHIQQISGYAGEMRIRRRWYV 828
Query: 246 Y 248
+
Sbjct: 829 F 829
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 558 RIAIDGGHFGNVPGGYHFWTGLLFSSCLSVLPFWYR 451
RI G HFG+ LL S+C+S+ WY+
Sbjct: 561 RIQSSGFHFGDYLTDPRIGPALLMSACISMGIIWYK 596
>07_01_1085 + 9890369-9892114,9892213-9892731
Length = 754
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 532 WQRSWRVPLLDWPFVLFLFIGASVLVPPRGRVQEGRV 422
W R++RV L WP +GA+V+VP ++GR+
Sbjct: 676 WDRAYRVCLKGWP---GYSLGANVVVPMAVDPKDGRI 709
>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
Length = 722
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 532 WQRSWRVPLLDWPFVLFLFIGASVLVPPRGRVQEGRV 422
W R++RV L WP +GA+V+VP ++GR+
Sbjct: 644 WDRAYRVCLKGWP---GYSLGANVVVPMAVDPKDGRI 677
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 523 SWRVPLLDWPFVLFLFIGASVLVPPR 446
+WR+ L PF L LF+ SVL+ R
Sbjct: 164 AWRLALAGLPFTLLLFVTPSVLLAGR 189
>04_01_0373 - 4913283-4913669
Length = 128
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 380 KSIGRGSGRCCQSRLSGDGEXNCDGGX*GGG 288
+ +G GR + G GE + +GG GGG
Sbjct: 82 REVGEVDGRTAERTSGGGGEEDVEGGRDGGG 112
>01_06_0602 + 30526867-30527358
Length = 163
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 395 HWNWKKSIGRGSGRCCQSRLSGDGEXNCDGG 303
+W K I R G C R +G+GE GG
Sbjct: 57 YWRRHKQIRRSFGLCTHRRQAGEGEEEKMGG 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,199,316
Number of Sequences: 37544
Number of extensions: 376712
Number of successful extensions: 1447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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