Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0053
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 34 0.069
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 34 0.069
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 34 0.069
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 34 0.069
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 34 0.069
AC024776-9|AAK68462.1| 244|Caenorhabditis elegans Set (trithora... 30 1.1
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 4.5
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge... 28 4.5
AF067949-4|AAC19237.1| 415|Caenorhabditis elegans Hypothetical ... 28 5.9
Z81586-1|CAB04690.1| 579|Caenorhabditis elegans Hypothetical pr... 27 7.9
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 66 SRAQTLSSETPLANPSPLLS----GCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQ 227
S+A T+ S L PSPL S + P G+++ + +++ HQQ RQ ++A +Q
Sbjct: 16 SQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQ 73
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 66 SRAQTLSSETPLANPSPLLS----GCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQ 227
S+A T+ S L PSPL S + P G+++ + +++ HQQ RQ ++A +Q
Sbjct: 18 SQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQ 75
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 66 SRAQTLSSETPLANPSPLLS----GCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQ 227
S+A T+ S L PSPL S + P G+++ + +++ HQQ RQ ++A +Q
Sbjct: 15 SQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQ 72
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 66 SRAQTLSSETPLANPSPLLS----GCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQ 227
S+A T+ S L PSPL S + P G+++ + +++ HQQ RQ ++A +Q
Sbjct: 53 SQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQ 110
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 66 SRAQTLSSETPLANPSPLLS----GCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQ 227
S+A T+ S L PSPL S + P G+++ + +++ HQQ RQ ++A +Q
Sbjct: 127 SQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQ 184
>AC024776-9|AAK68462.1| 244|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 23,
isoform a protein.
Length = 244
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 492 LFSSCLSVLPFWYRRGVECKRGEFXTCEAFGEALELEEIDR 370
+FS+C F R G + GEF CE GE + +E++R
Sbjct: 93 IFSTCEMAKGFGVRAGEQIAAGEF-VCEYAGECIGEQEVER 132
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 384 PIPVLPRTPHKXXTRPSCTRPRGGTKTEAPINRKRTKGQSRSGTLQERCQSVRRQWQCGL 563
P P R+P K P R G+K+ +P R+ R +R +S RR+
Sbjct: 449 PAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSS 508
Query: 564 QSR 572
SR
Sbjct: 509 SSR 511
>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
b-box coiled coil)domain containing protein 2 protein.
Length = 1032
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 53 GGRPLSGANPLQRDSFGEPL 112
GGR S ANP Q+D +G P+
Sbjct: 469 GGRSSSAANPSQQDEWGRPV 488
>AF067949-4|AAC19237.1| 415|Caenorhabditis elegans Hypothetical
protein T10H9.3 protein.
Length = 415
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 14 RSLDAEHPIDAVSGGRPLSGANPLQRDSFGEPLAFALRMSH 136
R + A+H D + R S +P++R+SF E + L H
Sbjct: 66 RKMLADHSQDYIFASRAYSKMSPMERESFDEDVKDKLTQFH 106
>Z81586-1|CAB04690.1| 579|Caenorhabditis elegans Hypothetical
protein T05F1.2 protein.
Length = 579
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 69 RAQTLSSETPLANPSPLLSGCRISPEGNISNCEDKSKIAHQQTYRQY 209
R+ T++ + PL+ P+L+G + S +I +K + Y Y
Sbjct: 389 RSVTINLDCPLSKSEPILNGLQYSKTSDIELSSPLTKAVEKNNYISY 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,624
Number of Sequences: 27780
Number of extensions: 277761
Number of successful extensions: 1002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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