Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0053
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64500.1 68414.m07312 glutaredoxin family protein                   29   2.4  
At4g25190.1 68417.m03626 hypothetical protein  contains Pfam pro...    28   4.2  
At5g37440.1 68418.m04504 DNAJ heat shock N-terminal domain-conta...    28   5.5  
At1g79790.1 68414.m09313 haloacid dehalogenase-like hydrolase fa...    28   5.5  
At1g14205.1 68414.m01681 ribosomal protein L18 family protein si...    27   9.6  

>At1g64500.1 68414.m07312 glutaredoxin family protein
          Length = 368

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 476 KQEENKRPVQKWYPPGTLP-KCPP 544
           ++E NK+PV  W P    P KCPP
Sbjct: 185 EKEGNKKPVMNWDPLREFPEKCPP 208


>At4g25190.1 68417.m03626 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 443

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 60  ALSRAQTLSSETPLANPSPLLSGCRISPEGNISNCEDKS 176
           ALS  +  + +TPL++ +P  S C   PE  +S  + +S
Sbjct: 134 ALSPGRLSTMKTPLSSSAPTTSMCMTPPESPVSKAKIRS 172


>At5g37440.1 68418.m04504 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 287

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = +3

Query: 378 FLPIPVLPRTPHKXXTRPSCTRPRGGTKTEAPINRKRTKGQSRSGTLQERCQSVRRQWQC 557
           F+   +  + P+K   + S  + +   + + PI   +    S S T    C S + +  C
Sbjct: 195 FIATEITTKEPNKSTKKSSHQQQQWSVQDKVPIKSTKNASSSPSVTFTWNCSSTKARSNC 254

Query: 558 G 560
           G
Sbjct: 255 G 255


>At1g79790.1 68414.m09313 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 245

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 386 WKKSIGRGSGRCCQSRLSGD 327
           WKK+  R SG CC    SGD
Sbjct: 20  WKKNPVRASGSCCLGSSSGD 39


>At1g14205.1 68414.m01681 ribosomal protein L18 family protein
           similar to SP|P09415 50S ribosomal protein L18 {Bacillus
           stearothermophilus}
          Length = 233

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 375 RFLPIPVLP-RTPHKXXTRPSCTRPRGGTKTEAPINRKRTKGQSRSGT 515
           R  P P  P R       +P     RG T+ E+P  R R   +  +GT
Sbjct: 21  RLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKKFTGT 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,053
Number of Sequences: 28952
Number of extensions: 266473
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)