Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0052
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.19
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.24
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.57
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.75
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 28 1.7
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 3.0
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 3.0
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 4.0
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 4.0
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 5.3
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 26 5.3
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.0
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 7.0
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 387 LYVGNIPFGVTEEETMEFFNQ 449
++VGNIP+ V+E++ E FNQ
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQ 29
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 357 GSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
G T+Q RR+YVGN+ + V E EF Q
Sbjct: 58 GQKYTQQERRVYVGNLSYQVRWFELKEFMGQ 88
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.57
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 387 LYVGNIPFGVTEEETMEFFNQ 449
+YVGNIP+ + EE+ ++ F Q
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQ 27
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.75
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 384 RLYVGNIPFGVTEEETMEFFNQ 449
+++VG +P TEEE FFNQ
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQ 269
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 267 TPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 368
+P+ YKA+ A +P + + P+A VP S I
Sbjct: 23 SPITYKALHANSPLPRCRIIEPPRATVPEAVSNI 56
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 309 PANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFF 443
P + P P G+ + R LYV NI F V E++ FF
Sbjct: 735 PIQVFISDPLRRTPRSGAVY--EGRELYVTNIDFKVNEKDVETFF 777
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 381 RRLYVGNIPFGVTEEETME 437
R +++GN+P G+TE+E E
Sbjct: 206 RNVFLGNLPNGITEDEIRE 224
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 384 RLYVGNIPFGVTEEETMEFF 443
RL+VG IP T E+ M+FF
Sbjct: 5 RLFVGRIPPQATREDMMDFF 24
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 279 YKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM 455
+ A ++ I I A TP P + +YVGN+P +EEE F+ Q+
Sbjct: 395 FSAYSSSHGIHQRIPASTPTNTNPADQNP---PCNTIYVGNLPPSTSEEELKVLFSTQV 450
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 343 PCRWWVRL*HVKREGYMSATYPLASP 420
P RWWV H G + A Y L P
Sbjct: 550 PLRWWVFRFHSLNAGIIQAAYALCFP 575
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 378 ARRLYVGNIPFGVTEEETMEFF 443
A+ +YVGN+ + VT EE F
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHF 75
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 372 RQARRLYVGNIPFGVTEEETMEFFNQ 449
+Q+ +YVGN+ F TEE+ F++
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSK 54
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQV 759
DS KI+I LP L EDQV
Sbjct: 307 DSKDKIYISNLPLNLGEDQV 326
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 333 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLS 464
PQ + G I Q G+IP +EET F +HLS
Sbjct: 597 PQFFSYINGYQIYLQQTNPATGSIPLKPIQEETFGAFQSNLHLS 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,661
Number of Sequences: 5004
Number of extensions: 64004
Number of successful extensions: 185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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