Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0052
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF prot... 125 2e-28
BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA au... 125 2e-28
BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA au... 125 2e-28
Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation fact... 33 1.5
Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation fact... 33 1.5
M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation fact... 33 1.5
BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation fa... 33 1.5
BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage sti... 33 1.5
BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation fa... 33 1.5
BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein. 31 4.7
BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor, argini... 31 4.7
BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed se... 31 4.7
BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation fa... 31 4.7
AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. 31 4.7
AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor, argini... 31 4.7
Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. 31 6.1
U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55... 31 6.1
U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. 31 6.1
L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, com... 31 6.1
CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. 31 6.1
BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containi... 31 6.1
BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containi... 31 6.1
BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containi... 31 6.1
BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. 31 6.1
BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. 31 6.1
BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containi... 31 6.1
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 31 6.1
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 31 6.1
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 31 6.1
>X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF
protein.
Length = 475
Score = 125 bits (302), Expect = 2e-28
Identities = 64/94 (68%), Positives = 69/94 (73%), Gaps = 8/94 (8%)
Frame = +3
Query: 252 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARRLYVGNIP 407
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARRLYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 408 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 509
FG+TEE M+FFN QM L GL QA GNPVLA QI
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 110 bits (265), Expect = 5e-24
Identities = 53/71 (74%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +2
Query: 488 PCFGLPDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPG-TENPAI 664
P + N DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHDYQP+PG +ENP++
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV 244
Query: 665 NVPAGVISTVV 697
VP GV+STVV
Sbjct: 245 YVP-GVVSTVV 254
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
DS HK+FIGGLPNYLN+DQVK
Sbjct: 256 DSAHKLFIGGLPNYLNDDQVK 276
>BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 125 bits (302), Expect = 2e-28
Identities = 64/94 (68%), Positives = 69/94 (73%), Gaps = 8/94 (8%)
Frame = +3
Query: 252 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARRLYVGNIP 407
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARRLYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 408 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 509
FG+TEE M+FFN QM L GL QA GNPVLA QI
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 110 bits (265), Expect = 5e-24
Identities = 53/71 (74%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +2
Query: 488 PCFGLPDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPG-TENPAI 664
P + N DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHDYQP+PG +ENP++
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV 244
Query: 665 NVPAGVISTVV 697
VP GV+STVV
Sbjct: 245 YVP-GVVSTVV 254
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
DS HK+FIGGLPNYLN+DQVK
Sbjct: 256 DSAHKLFIGGLPNYLNDDQVK 276
>BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 125 bits (302), Expect = 2e-28
Identities = 64/94 (68%), Positives = 69/94 (73%), Gaps = 8/94 (8%)
Frame = +3
Query: 252 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARRLYVGNIP 407
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARRLYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 408 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 509
FG+TEE M+FFN QM L GL QA GNPVLA QI
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 110 bits (265), Expect = 5e-24
Identities = 53/71 (74%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +2
Query: 488 PCFGLPDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPG-TENPAI 664
P + N DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHDYQP+PG +ENP++
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV 244
Query: 665 NVPAGVISTVV 697
VP GV+STVV
Sbjct: 245 YVP-GVVSTVV 254
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
DS HK+FIGGLPNYLN+DQVK
Sbjct: 256 DSAHKLFIGGLPNYLNDDQVK 276
>Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation factor
protein.
Length = 577
Score = 32.7 bits (71), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage
stimulation factor, 3' pre-RNA, subunit 2, 64kD protein.
Length = 559
Score = 32.7 bits (71), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 1 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 37
>BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein.
Length = 508
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 524 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 658
FAF+EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 108 FAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 152
>BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 524 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 658
FAF+EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 108 FAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 152
>BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed
sequence AI450757 protein.
Length = 386
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 524 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 658
FAF+EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 224 FAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 268
>BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
protein.
Length = 616
Score = 31.1 bits (67), Expect = 4.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
+++ V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein.
Length = 616
Score = 31.1 bits (67), Expect = 4.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 339 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
+++ V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 524 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 658
FAF+EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 108 FAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 152
>Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55
protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA,
complete cds. ).
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 270 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P+ QA+ Q + D P G Q RL+VGN+P +TEEE + F +
Sbjct: 40 PIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK 96
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.7 bits (66), Expect = 6.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 366 ITRQARRLYVGNIPFGVTEEETMEFFNQ 449
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.7 bits (66), Expect = 6.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 366 ITRQARRLYVGNIPFGVTEEETMEFFNQ 449
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 30.7 bits (66), Expect = 6.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 366 ITRQARRLYVGNIPFGVTEEETMEFFNQ 449
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,502,681
Number of Sequences: 237096
Number of extensions: 2577223
Number of successful extensions: 9953
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 9550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9950
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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