Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0052
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 120 1e-27
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 120 1e-27
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 120 1e-27
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 120 1e-27
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 32 0.53
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 30 1.6
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 29 2.8
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 29 2.8
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z83102-3|CAB05466.1| 399|Caenorhabditis elegans Hypothetical pr... 28 6.5
U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical p... 28 6.5
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 6.5
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 120 bits (289), Expect = 1e-27
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = +3
Query: 252 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEET 431
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE
Sbjct: 145 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 200
Query: 432 MEFFNQQMHLSGLAQAAGNPVLACQI 509
++FFNQQMHL GLAQA GNP+L CQI
Sbjct: 201 LDFFNQQMHLCGLAQAPGNPILLCQI 226
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/64 (64%), Positives = 48/64 (75%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVIS 688
NLDKNFAF+EFRSIDETT MAFDGINF GQ LK+RRP DYQP T + +P +S
Sbjct: 227 NLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMP---VS 283
Query: 689 TVVL 700
T+V+
Sbjct: 284 TIVV 287
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVKNYSC 774
DS +KIFIGGLPNYL EDQVK C
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLC 312
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 120 bits (289), Expect = 1e-27
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = +3
Query: 252 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEET 431
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE
Sbjct: 145 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 200
Query: 432 MEFFNQQMHLSGLAQAAGNPVLACQI 509
++FFNQQMHL GLAQA GNP+L CQI
Sbjct: 201 LDFFNQQMHLCGLAQAPGNPILLCQI 226
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/64 (64%), Positives = 48/64 (75%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVIS 688
NLDKNFAF+EFRSIDETT MAFDGINF GQ LK+RRP DYQP T + +P +S
Sbjct: 227 NLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMP---VS 283
Query: 689 TVVL 700
T+V+
Sbjct: 284 TIVV 287
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVKNYSC 774
DS +KIFIGGLPNYL EDQVK C
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLC 312
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 120 bits (289), Expect = 1e-27
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = +3
Query: 252 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEET 431
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE
Sbjct: 120 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 175
Query: 432 MEFFNQQMHLSGLAQAAGNPVLACQI 509
++FFNQQMHL GLAQA GNP+L CQI
Sbjct: 176 LDFFNQQMHLCGLAQAPGNPILLCQI 201
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/64 (64%), Positives = 48/64 (75%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVIS 688
NLDKNFAF+EFRSIDETT MAFDGINF GQ LK+RRP DYQP T + +P +S
Sbjct: 202 NLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMP---VS 258
Query: 689 TVVL 700
T+V+
Sbjct: 259 TIVV 262
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVKNYSC 774
DS +KIFIGGLPNYL EDQVK C
Sbjct: 263 DSANKIFIGGLPNYLTEDQVKELLC 287
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 120 bits (289), Expect = 1e-27
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = +3
Query: 252 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEET 431
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE
Sbjct: 123 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 178
Query: 432 MEFFNQQMHLSGLAQAAGNPVLACQI 509
++FFNQQMHL GLAQA GNP+L CQI
Sbjct: 179 LDFFNQQMHLCGLAQAPGNPILLCQI 204
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/64 (64%), Positives = 48/64 (75%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVIS 688
NLDKNFAF+EFRSIDETT MAFDGINF GQ LK+RRP DYQP T + +P +S
Sbjct: 205 NLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMP---VS 261
Query: 689 TVVL 700
T+V+
Sbjct: 262 TIVV 265
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVKNYSC 774
DS +KIFIGGLPNYL EDQVK C
Sbjct: 266 DSANKIFIGGLPNYLTEDQVKELLC 290
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 381 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLAC 503
R +YVGN+P GV E +E FN A+ A P L C
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPC 204
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 503 PDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR--RPHDYQPMPGTENPAI 664
PD L +A++EF A+ DG FK + LKI+ R +P T+ A+
Sbjct: 199 PDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKPQAKTDEQAL 254
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 381 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLAC 503
R +YVGN+P GV E +E FN A+ A P L C
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPC 204
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 503 PDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR--RPHDYQPMPGTENPAI 664
PD L +A++EF A+ DG FK + LKI+ R +P T+ A+
Sbjct: 199 PDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKPQAKTDEQAL 254
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 387 LYVGNIPFGVTEEETMEFFNQQM 455
++VGN+PF +TE+ + FF+ Q+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQI 270
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 518 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPG 646
KNFAF+EF+ ++ A+ G F+ + + + +P G
Sbjct: 87 KNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMG 129
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 387 LYVGNIPFGVTEEETMEFFN 446
+YVGN PF TEEE FF+
Sbjct: 7 VYVGNAPFQTTEEELGNFFS 26
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 665 NVPAGVISTVVLIPHTRSL*GDCLII 742
N+PAG++ST + PHTRS L++
Sbjct: 1281 NLPAGLLSTDAINPHTRSFKSGALLM 1306
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 665 NVPAGVISTVVLIPHTRSL*GDCLII 742
N+PAG++ST + PHTRS L++
Sbjct: 1279 NLPAGLLSTDAINPHTRSFKSGALLM 1304
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 387 LYVGNIPFGVTEEETMEFFNQQMHLSGL 470
+YVGN PF TE++ +F+Q ++S +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNV 33
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 375 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGL 470
Q +YVGN+P+ TEEE +F H++ +
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNV 35
>Z83102-3|CAB05466.1| 399|Caenorhabditis elegans Hypothetical
protein C54C8.4 protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 569 MAFDGINFKGQSLKIRRPHDYQPMPGTE-NPAINVPAGVISTVVLI--PHTRS 718
+ F G N K L RRP YQP P E +N+ + I+ V+++ H RS
Sbjct: 29 LLFTGSNIKNL-LNERRPQKYQPYPIIEAGGGLNISSENIAIVIILSKSHDRS 80
>U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical
protein D1044.1 protein.
Length = 382
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 503 PDNLDKNFAFLEFRSIDETTQAMAFDGINFKG 598
PDN D+N L + E T F GI F G
Sbjct: 85 PDNADENMEILRTLTAQEVTFYSDFSGIQFSG 116
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 342 AVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
A PVVGS T +++VG +P+ +++ E+F Q
Sbjct: 23 AEPVVGSRDT-MFTKIFVGGLPYHTSDKTLHEYFEQ 57
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 381 RRLYVGNIPFGVTEEE 428
R++YVGN+PF TE+E
Sbjct: 17 RQVYVGNMPFDATEKE 32
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 378 ARRLYVGNIPFGVTEEETMEFFN 446
A+ +YVGN+ +G T EE + F+
Sbjct: 77 AKSVYVGNVDYGATAEEIEQHFH 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,541
Number of Sequences: 27780
Number of extensions: 382905
Number of successful extensions: 1061
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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