Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0051
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    32   0.077
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.7  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   2.9  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.9  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   6.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   6.7  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   8.9  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   8.9  

>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +1

Query: 589 CPHLGANLAVGGTVRGSCIECPFHKWRFNAA-GTASVCPALILHQ--KAYRSGPGAWW 753
           C H GA LA G       I CP+H   FNAA G     PA+   +       G G+ W
Sbjct: 61  CSHYGAPLAKGVVTSDGHIVCPWHGACFNAATGDVEDTPAIAALRTFPVTEEGDGSLW 118


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 81  QTNKM-ADRQHFPSAITEAVSSNTACPDTGPKAETTN 188
           +TN++    +HFP+   E   ++   P TGP  E+T+
Sbjct: 377 ETNQIPTTEEHFPATTEEVAPASEEKPATGPAEESTS 413


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 226 DSIVIFFWSSRKMFVV--SAFGPVSGHAVFE 140
           D+I + F S+R +  V  S FG ++GHAVFE
Sbjct: 244 DAIPLKFLSARCLKFVRPSLFGYITGHAVFE 274


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 74  SNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNN 184
           SN  +Q GG ST+ I  HG R    G   + + + NN
Sbjct: 170 SNELEQFGGESTYFITKHGVRTLAMGFLFNFSSNANN 206


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 69  LSQIQTNKMADRQHFPSAITEAVSSNTA 152
           LS + T K +D +H   + T  VSSNTA
Sbjct: 168 LSNVFTEKSSDYRHGLGSPTSLVSSNTA 195


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 247  ELNTCFDDSIVIFFWSSRKMFVVSAFGP 164
            EL+ CF+D+I  F+       V   F P
Sbjct: 1018 ELHRCFEDTISFFYNKKNPKVVTGVFNP 1045


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 82  KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQ 186
           K+ + +I  +  PPS+KP   T   P PD + K++
Sbjct: 346 KEVERKIEKLLEPPSQKP---TVALPVPDDRPKRR 377


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 710 IRAGQTDAVPAALKRHLWKGHSI--QLPRTVPPTARFAPKCGQYAS 579
           +RAG+   + A+L      G S     PR  PPT+ F+ +  +YAS
Sbjct: 184 LRAGRGSQISASLAWLKTGGASAAPSNPRQPPPTSNFSNRKARYAS 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,446
Number of Sequences: 5004
Number of extensions: 74714
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)