Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0051
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20) 32 0.44
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11) 30 1.8
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 30 1.8
SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16) 30 1.8
SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 30 2.3
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22) 29 4.1
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012) 29 5.4
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 28 7.2
SB_39766| Best HMM Match : RVT_1 (HMM E-Value=1.8e-07) 28 7.2
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031) 28 7.2
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_52679| Best HMM Match : CBM_X (HMM E-Value=0.23) 28 7.2
SB_42168| Best HMM Match : NolV (HMM E-Value=7.1) 28 7.2
SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11) 28 7.2
SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_18677| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12) 28 9.5
>SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 89.4 bits (212), Expect = 3e-18
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +1
Query: 517 IDALGQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNA-AGTAS 693
+ LG+NL V+RGEDG+ VDAYCPHLGANL VGG V G+C++CPFH W+F G S
Sbjct: 140 VSCLGENLAVFRGEDGVVCIVDAYCPHLGANLGVGGQVVGNCLQCPFHGWKFRGDDGKCS 199
Query: 694 VCP-ALILHQKAYRSGPGAWW 753
P + + + A + P + W
Sbjct: 200 EIPYSKNIPEYAKEARPSSQW 220
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +2
Query: 266 ILTLMFAFSAILYVIYKSYISPVFYKKELTEVGFDHIPQGPDKGRRISRAQASRRMGSKL 445
+ + F + I+ + K SP+ + L E G+ IP R ++ +
Sbjct: 58 LAAVCFIATRIVVKLCKLLFSPIILTRRLEEAGY--IPDERHTLRDVAEHTRRLKNAGDF 115
Query: 446 PPPYPNGWFAVAETRELKVGS 508
PP +PNGWF V +++LKVG+
Sbjct: 116 PPVFPNGWFEVMGSQDLKVGN 136
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 529 GQNLCVYRGEDGLARCVDAYCPHLGANLAVG-----GTVRGSCIECPFHKWRFN 675
G+ + +++ G +D +CPH+G L +G G R CI CP+HKW+FN
Sbjct: 418 GKRIALFKHR-GQVYAMDEHCPHMGGPLHLGDIEELGEARRLCIVCPWHKWKFN 470
>SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20)
Length = 216
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 556 EDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFN 675
E+G V C H GA LA G RG + CP+H FN
Sbjct: 144 ENGTFYAVGHKCTHYGAPLASGALCRGR-VRCPWHGACFN 182
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 399 GGSVAPKPPDGWAANCPLPTPMGGSRSPKQ 488
GGSV P PP N PLP P G +P Q
Sbjct: 916 GGSVPPPPPPP-GGNAPLPPPPPGGSAPSQ 944
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = +3
Query: 396 GGGSVAPKPPDGWAANCPLPTPMGGSRSPKQGSLKLAAPLYRCPG 530
GG + + PP G A P P P GGS P G A PL PG
Sbjct: 938 GGSAPSQPPPPGGNAP-PPPPPPGGSAPPPGGG---APPLPPPPG 978
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 311 YKSYISPVFYKKELTEVGFDHIPQGPDKGRRISRAQASRRMGSKLPPPYP 460
YKSY ++ G D +PQ P + S+ + R +K PPP P
Sbjct: 27 YKSYSGIEYHLLNFKHDGTD-VPQPPPSSSKKSKGRGRRSAKNKKPPPSP 75
>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 396 GGGSVAPKPPDGWAANCPLPTPMGGSRSPKQGSLKLAAPLYRCPG 530
G + AP P + +C +P S SP QGS + P Y C G
Sbjct: 491 GASAAAPSPMKAYNDHCVVP--QDASCSPAQGSSLVFRPGYECKG 533
>SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)
Length = 155
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 192 KCLLFLLSVRCRGTPCSKRRLP*WRMENVDDPP 94
+CLLF+++V TPC + LP W E++D P
Sbjct: 4 RCLLFVIAVVGTVTPCISKYLPTW--ESLDSRP 34
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 390 TRGGGSVAPKPP-DGWAANCPLPTPMGGSRSP 482
T GG V P PP DG A P P P GG+ P
Sbjct: 285 TGGGAPVPPPPPADGSAPAPPPPPPPGGAPPP 316
>SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16)
Length = 299
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 355 RSRLRSYTSRSGQGEADQSRPSLQTDGQQ 441
R+RLR+ T+ SGQ ++S SL+TD QQ
Sbjct: 67 RARLRTLTTESGQSSENES--SLETDNQQ 93
>SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 526 LGQNLCVYRGEDGLARCV--DAYCPHLGANLAVGGTVRGSCIECPF 657
+G+N V + GL+R + D YC H GA + T +C++ F
Sbjct: 380 VGENNTVKVADFGLSRLIEDDIYCAHEGAKFPIKWTAPEACLQGQF 425
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 223 SHQNTYSVRSLIYFNTNLNVCVLRDFVCYIQVIYQSCFL*KGTDRSRLRSYTSR 384
+H + ++R +++ LNVC+L + I + Y S +G + SRLR T R
Sbjct: 678 AHSDEVTIRKSVFYGLYLNVCMLYAYFNIIIIHYVSLVRQQGPN-SRLRLTTPR 730
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 29.5 bits (63), Expect = 3.1
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +2
Query: 404 ISRAQASR---RMGSKLPPPYPNGWFAVAETRELKVGSSSLS-MPWVRICACTVARTAWP 571
+SR SR R +LPP G AE SSS + +P +RI T+A + P
Sbjct: 259 VSRPSGSRDPLRTTIRLPPTRRAG---PAENNTAAASSSSAARVPPLRISVRTIAEVSPP 315
Query: 572 GAWTHTVRIWARILRSAARCVAAVSNAPSISGVSTR 679
R AR R + AAV+ + G STR
Sbjct: 316 QEAGPPARGGARSARVGRQSAAAVAVSSEAGGSSTR 351
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 390 TRGGGSVAPKPPDGWAANCPLPTPMGGSRSPKQGSLKLAAPLY 518
T GG ++ P+ + TP+GG KQG+ + P+Y
Sbjct: 285 TGGGETITVHIPESQLVHLGASTPVGGKGVRKQGATSVFVPIY 327
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 586 YCPHLGANLAVGGTVRGSCIECPF 657
+CPH N+A GGT G C PF
Sbjct: 1046 FCPH--CNVAHGGTAGGDCCHFPF 1067
>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 398 RRISRAQASRRMGSKLPPPYPNGWFAVAETRELKVGSSSLSMPWVRICACTVARTAWPGA 577
R ++ Q + + S L P G A+ + LK+G + L+ P + + WPG+
Sbjct: 281 RPVTEGQVLKELHS-LKPEKAAGCDAIPP-KLLKIGETELAKPLTSLFNSCIKSKVWPGS 338
Query: 578 W 580
W
Sbjct: 339 W 339
>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
Length = 884
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 398 RRISRAQASRRMGSKLPPPYPNGWFAVAETRELKVGSSSLSMPWVRICACTVARTAWPGA 577
R ++ Q + + S L P G A+ + LK+G + L+ P + + WPG+
Sbjct: 141 RPVTEGQVLKELHS-LKPEKAAGCDAIPP-KLLKIGETELAKPLTSLFNSCIKSKVWPGS 198
Query: 578 W 580
W
Sbjct: 199 W 199
>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
Length = 558
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 398 RRISRAQASRRMGSKLPPPYPNGWFAVAETRELKVGSSSLSMPWVRICACTVARTAWPGA 577
R ++ Q + + S L P G A+ + LK+G + L+ P + + WPG+
Sbjct: 486 RPVTEGQVLKELHS-LKPGKAAGCDAIPP-KLLKIGETELAKPLTSLFNSCIKSKVWPGS 543
Query: 578 W 580
W
Sbjct: 544 W 544
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 404 ISRAQASRRMGSKLPPPYPNGW--FAVAETRELKVGSSSLSMPWVR 535
+ AS R ++ PPP P GW A R + ++ + WVR
Sbjct: 167 VEEPSASARSSAEQPPPLPEGWEERQDANGRTFYIDHTTRTTTWVR 212
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G+ L+ P + + AWP AW
Sbjct: 26 LKIGAEELARPLATLYNSCITAGAWPSAW 54
>SB_39766| Best HMM Match : RVT_1 (HMM E-Value=1.8e-07)
Length = 392
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G+ L+ P + + AWP AW
Sbjct: 109 LKIGAEELARPLATLYNSCITAGAWPSAW 137
>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 623 PPTARFAPKCGQYASTHRARPS 558
P TA PKCG + H+A+PS
Sbjct: 212 PATAHKCPKCGLNLNKHQAKPS 233
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G+ L+ P + + AWP AW
Sbjct: 1961 LKIGAEELARPLATLYNSCITAGAWPSAW 1989
>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
Length = 546
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G+ L+ P + + AWP AW
Sbjct: 287 LKIGAEELARPLATLYNSCITAGAWPSAW 315
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G+ L+ P + + AWP AW
Sbjct: 689 LKIGAEELARPLATLYNSCITAGAWPSAW 717
>SB_52679| Best HMM Match : CBM_X (HMM E-Value=0.23)
Length = 227
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 LLSQIQTNKMADRQHFPSAITEAVSSNTACPDTGPKAET-TNIFLLLQKNITIESSKHVF 242
+L + N++ D H P + E S P T +A T I +LL+ ++ + S +
Sbjct: 94 MLMRYYKNRVVDLSHVPESFKEPPPSTIPTPQTVSRASTGPKIGMLLENSLKLFSINNKI 153
Query: 243 SSIVN 257
S N
Sbjct: 154 MSTEN 158
>SB_42168| Best HMM Match : NolV (HMM E-Value=7.1)
Length = 414
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G+ L+ P + + AWP AW
Sbjct: 224 LKIGAEELARPLATLYNSCITAGAWPSAW 252
>SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11)
Length = 887
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G+ L+ P + + AWP AW
Sbjct: 710 LKIGAEELARPLATLYNSCITAGAWPSAW 738
>SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 494 LKVGSSSLSMPWVRICACTVARTAWPGAW 580
LK+G + L+ P + + WPG+W
Sbjct: 108 LKIGETELAKPLTSLFNSCIKSKVWPGSW 136
>SB_18677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 585 ILSAFGRESCGRRHGAWQLYRMPLP*VAFQRGRHCVSL 698
I+ A + + RHGAW YR+ F G H +SL
Sbjct: 69 IIPAVKQRALPERHGAWAPYRLLEEEPQFAFGEHSMSL 106
>SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)
Length = 389
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 390 TRGGGSVAPKPPDGWAANCPLPTPMGGSRSPKQGSL 497
++ G S PP + + P P+G SPKQGS+
Sbjct: 41 SQAGSSSVTSPPYRSSESSPYRGPVGRVASPKQGSM 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,617,592
Number of Sequences: 59808
Number of extensions: 647121
Number of successful extensions: 3562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3549
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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