Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0048
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.2  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    23   3.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 492 SSQNSGAL*FNNLKATLPTSETPKKTSYLTVDLYTNI 382
           S +NS +   NN+ +    ++TP  T+ + +D+ T +
Sbjct: 412 SEENSQSDITNNVNSPASMNQTPPPTAQMGLDMVTGL 448


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 544 CWDNFNIQSIYSSSHTTGGIR 606
           C+D+ ++ S+YSS   T  IR
Sbjct: 103 CFDDVDLNSLYSSYEITRFIR 123


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 263  LYEVGLPTPVAGALMMRIFVEV 198
            L+  GL + + G +MM +FV V
Sbjct: 943  LFFAGLISAIYGLIMMAVFVGV 964


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 263  LYEVGLPTPVAGALMMRIFVEV 198
            L+  GL + + G +MM +FV V
Sbjct: 943  LFFAGLISAIYGLIMMAVFVGV 964


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 153 TRPLRWAFKINIIISHLHKDSHH 221
           T+PL  A  +N++ S+  + SHH
Sbjct: 777 TKPLVDAQTMNLLRSYHQQQSHH 799


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,820
Number of Sequences: 336
Number of extensions: 3958
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)