Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0048
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    31   0.19 
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   4.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   5.5  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   9.5  

>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   NRQVGHMLRTKLADANEGGVAAGLGALDS 91
           N Q G + RTK    NEGGVA G  +L S
Sbjct: 465 NGQSGFICRTKPKKTNEGGVATGYASLSS 493


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 395 YILIYINLRW--FLRMFRYNY*TVHPIDLKLGIHVENTCT*WIG*YLY 258
           Y+L + +L W  FL   +  Y   HP+DL L   +   C  ++G Y++
Sbjct: 263 YMLSFGDLVWVPFLYSLQARYLAFHPVDLGLVKTLAILCLQFLGYYIF 310


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 530 PNVANLIQTNTYFLHRTVAPSSLII*K--QHC-LRRKLPKRPHTSP*IYILIYINLRWFL 360
           PN   L   N  F++ T     LI+    +H  L+R  P RP  +   +  I+ NL W +
Sbjct: 142 PNAYELPSLNERFVYMTYFSHILILALTVEHLYLQRDSPSRPVINVSFFNYIFQNLGWLI 201

Query: 359 R 357
           R
Sbjct: 202 R 202


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 438 TSETPKKTSYLTVDLYTNIYKSTVVFTDVP 349
           T+ TPKKT+   +D+ TNI    +  T VP
Sbjct: 185 TNVTPKKTT-TQIDVQTNIVTPPITVTAVP 213


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 332 RFSSYNGTSVKTTVDLYILVYKSTVRYEVFLGVSDVGNVAFKLLN 466
           R   YNG   K  ++ Y+LVY    R +  L      +V F + N
Sbjct: 522 RAKGYNGNPFKRFMNAYMLVYFRKSRLDHILSPVTAEDVPFHVRN 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,862
Number of Sequences: 5004
Number of extensions: 63686
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)